Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.41□□□□□ -1.7
BRCA1P38398 AC245100.2-201ENST00000454544 1679 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 AC068254.2-201ENST00000623938 3577 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
BRCA1P38398 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.41□□□□□ -1.7
BRCA1P38398 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.41□□□□□ -1.7
BRCA1P38398 AC007685.1-201ENST00000329806 452 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
BRCA1P38398 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.41□□□□□ -1.7
BRCA1P38398 VDAC2P1-201ENST00000399358 958 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 RN7SKP53-201ENST00000411337 315 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 AC017079.2-201ENST00000416102 485 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 OR51A6P-201ENST00000418680 1004 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
BRCA1P38398 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.41□□□□□ -1.7
BRCA1P38398 AC008065.1-201ENST00000428525 348 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 VN1R96P-201ENST00000446052 858 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 CCRL1P1-201ENST00000449542 1053 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
BRCA1P38398 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
BRCA1P38398 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.41□□□□□ -1.7
BRCA1P38398 IGLV3-26-201ENST00000520756 302 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.41□□□□□ -1.7
BRCA1P38398 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
BRCA1P38398 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.41□□□□□ -1.7
BRCA1P38398 LARP7P3-201ENST00000579888 337 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.41□□□□□ -1.7
BRCA1P38398 MIR4276-201ENST00000584832 70 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 AC124312.4-201ENST00000605533 310 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.41□□□□□ -1.7
BRCA1P38398 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 MIR7154-201ENST00000620673 73 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC4.41□□□□□ -1.7
BRCA1P38398 AC138627.1-204ENST00000641894 765 ntBASIC4.41□□□□□ -1.7
BRCA1P38398 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
BRCA1P38398 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
BRCA1P38398 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
BRCA1P38398 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
BRCA1P38398 FAM35BP-202ENST00000497389 3337 ntBASIC4.4□□□□□ -1.7
BRCA1P38398 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
BRCA1P38398 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.7
BRCA1P38398 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
BRCA1P38398 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
BRCA1P38398 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
BRCA1P38398 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
BRCA1P38398 Z95331.1-201ENST00000623075 23112 ntBASIC4.4□□□□□ -1.71
BRCA1P38398 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.4□□□□□ -1.71
BRCA1P38398 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
BRCA1P38398 U3.19-201ENST00000390893 196 ntBASIC4.4□□□□□ -1.71
BRCA1P38398 RNA5SP80-201ENST00000410475 111 ntBASIC4.4□□□□□ -1.71
BRCA1P38398 SEPT7P8-201ENST00000413308 775 ntBASIC4.4□□□□□ -1.71
BRCA1P38398 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC4.4□□□□□ -1.71
BRCA1P38398 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC4.4□□□□□ -1.71
BRCA1P38398 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.4□□□□□ -1.71
BRCA1P38398 RNU6-943P-201ENST00000516960 98 ntBASIC4.4□□□□□ -1.71
BRCA1P38398 UBE2NP1-201ENST00000545592 458 ntBASIC4.4□□□□□ -1.71
BRCA1P38398 AC006023.1-201ENST00000603944 259 ntBASIC4.4□□□□□ -1.71
BRCA1P38398 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.4□□□□□ -1.71
BRCA1P38398 DDX18P4-201ENST00000511690 1966 ntBASIC4.4□□□□□ -1.71
BRCA1P38398 CR382285.2-201ENST00000624662 1495 ntBASIC4.4□□□□□ -1.71
BRCA1P38398 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
BRCA1P38398 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
BRCA1P38398 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
BRCA1P38398 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.39□□□□□ -1.71
BRCA1P38398 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
BRCA1P38398 RNU6-301P-201ENST00000384277 107 ntBASIC4.39□□□□□ -1.71
BRCA1P38398 HMGB3P20-201ENST00000417997 600 ntBASIC4.39□□□□□ -1.71
BRCA1P38398 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC4.39□□□□□ -1.71
BRCA1P38398 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC4.39□□□□□ -1.71
BRCA1P38398 RPL5P30-201ENST00000465511 891 ntBASIC4.39□□□□□ -1.71
BRCA1P38398 RN7SL504P-201ENST00000494496 287 ntBASIC4.39□□□□□ -1.71
BRCA1P38398 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.39□□□□□ -1.71
BRCA1P38398 AC092747.2-201ENST00000545069 983 ntBASIC4.39□□□□□ -1.71
BRCA1P38398 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC4.39□□□□□ -1.71
BRCA1P38398 AC006539.2-201ENST00000601729 572 ntBASIC4.39□□□□□ -1.71
BRCA1P38398 AL162274.2-201ENST00000614406 332 ntBASIC4.39□□□□□ -1.71
BRCA1P38398 AC127502.3-201ENST00000636170 1206 ntBASIC4.39□□□□□ -1.71
BRCA1P38398 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.39□□□□□ -1.71
BRCA1P38398 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
BRCA1P38398 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
BRCA1P38398 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
BRCA1P38398 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
BRCA1P38398 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
BRCA1P38398 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
BRCA1P38398 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
BRCA1P38398 RN7SKP111-201ENST00000410349 271 ntBASIC4.39□□□□□ -1.71
BRCA1P38398 SNORA79B-201ENST00000410557 148 ntBASIC4.39□□□□□ -1.71
BRCA1P38398 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.39□□□□□ -1.71
BRCA1P38398 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.39□□□□□ -1.71
BRCA1P38398 AC011825.1-201ENST00000484967 388 ntBASIC4.39□□□□□ -1.71
BRCA1P38398 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.39□□□□□ -1.71
BRCA1P38398 AC023141.12-201ENST00000512399 199 ntBASIC4.39□□□□□ -1.71
BRCA1P38398 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
BRCA1P38398 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
BRCA1P38398 AC093535.2-201ENST00000624769 2326 ntBASIC4.39□□□□□ -1.71
BRCA1P38398 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
BRCA1P38398 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
BRCA1P38398 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
BRCA1P38398 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.38□□□□□ -1.71
BRCA1P38398 AC090337.1-201ENST00000579651 2074 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms