Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RNA5SP309-201ENST00000516670 106 ntBASIC2.99□□□□□ -1.93
HLA-DMBP28068 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
HLA-DMBP28068 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 RN7SL600P-201ENST00000581811 299 ntBASIC2.99□□□□□ -1.93
HLA-DMBP28068 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 MIR4512-201ENST00000583257 77 ntBASIC2.99□□□□□ -1.93
HLA-DMBP28068 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 AC103710.3-201ENST00000608157 948 ntBASIC2.99□□□□□ -1.93
HLA-DMBP28068 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 RNA5SP196-201ENST00000625967 102 ntBASIC2.99□□□□□ -1.93
HLA-DMBP28068 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 RNA5SP130-201ENST00000364431 114 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 RNU6-328P-201ENST00000390887 106 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 RPL31P52-201ENST00000407532 367 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 RN7SKP33-201ENST00000410942 340 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 RPL7AP73-201ENST00000413490 353 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 AC009237.5-201ENST00000414271 501 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 AL356095.1-201ENST00000417217 199 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 AL356276.2-201ENST00000435919 558 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 USP9YP7-201ENST00000436723 430 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 HMGB1P37-201ENST00000439613 609 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 AL162151.2-201ENST00000448875 158 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 USP9YP32-201ENST00000452432 430 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 AL132838.2-201ENST00000492041 314 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 KATNBL1P4-201ENST00000503545 918 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 NDUFB4P9-201ENST00000511646 388 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 RGS5-218ENST00000526176 574 ntTSL 4 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 OR8R1P-201ENST00000543943 764 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 MIR6867-201ENST00000610636 67 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 CFTRP2-201ENST00000634304 199 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 AC244205.2-202ENST00000635781 342 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
HLA-DMBP28068 AL021368.2-201ENST00000606125 5352 ntBASIC2.98□□□□□ -1.93
HLA-DMBP28068 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
HLA-DMBP28068 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
HLA-DMBP28068 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
HLA-DMBP28068 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
HLA-DMBP28068 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
HLA-DMBP28068 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC2.98□□□□□ -1.93
HLA-DMBP28068 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
HLA-DMBP28068 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
HLA-DMBP28068 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HLA-DMBP28068 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
HLA-DMBP28068 MIR372-201ENST00000362225 67 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 RNU1-64P-201ENST00000365443 163 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 SNORD6-201ENST00000365444 73 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC2.97□□□□□ -1.93
HLA-DMBP28068 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC2.97□□□□□ -1.93
HLA-DMBP28068 ENSAP1-201ENST00000392855 326 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
HLA-DMBP28068 RPL21P65-201ENST00000406094 466 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 SNX10-203ENST00000409367 746 ntTSL 5 BASIC2.97□□□□□ -1.93
HLA-DMBP28068 RNU4-6P-201ENST00000410804 122 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 PTP4A1P5-201ENST00000420305 455 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 HIGD1AP4-201ENST00000430194 280 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 AL117339.2-201ENST00000430475 180 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 ATP5HP2-201ENST00000433885 485 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 KCTD10P1-201ENST00000434203 625 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC2.97□□□□□ -1.93
HLA-DMBP28068 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC2.97□□□□□ -1.93
HLA-DMBP28068 AL500522.2-201ENST00000448562 343 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC2.97□□□□□ -1.93
HLA-DMBP28068 RNU7-170P-201ENST00000459303 61 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 AC021205.1-201ENST00000468797 348 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 AC020898.1-201ENST00000474167 787 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 AC087385.1-201ENST00000475062 312 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC2.97□□□□□ -1.93
HLA-DMBP28068 RN7SL271P-201ENST00000487601 295 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 RPL7P47-201ENST00000497299 556 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
HLA-DMBP28068 BTF3L4P4-201ENST00000506381 449 ntBASIC2.97□□□□□ -1.93
HLA-DMBP28068 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC2.97□□□□□ -1.93
HLA-DMBP28068 RNA5SP179-201ENST00000517284 121 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 132.2 ms