Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC4.74□□□□□ -1.65
HOXA3O43365 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC4.74□□□□□ -1.65
HOXA3O43365 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXA3O43365 CCT4P2-201ENST00000233836 1548 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 Y_RNA.1-201ENST00000352915 104 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
HOXA3O43365 MIR649-201ENST00000384843 97 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 ARF4P3-201ENST00000397387 509 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 HMGB1P20-201ENST00000402555 677 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 OR3A2-201ENST00000408891 1076 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 MTCO1P17-201ENST00000411522 491 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 MRPL53P1-201ENST00000414323 319 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXA3O43365 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXA3O43365 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC4.74□□□□□ -1.65
HOXA3O43365 AC012498.1-201ENST00000424037 437 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXA3O43365 AC099677.3-201ENST00000427081 395 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 RPS27AP6-201ENST00000427962 448 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC4.74□□□□□ -1.65
HOXA3O43365 RPS3AP54-201ENST00000435535 734 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 RSU1P2-202ENST00000437884 485 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXA3O43365 KRTAP8-2P-201ENST00000440620 186 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 MTND4LP16-201ENST00000440828 295 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 USP9YP8-201ENST00000441913 500 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 FHP1-201ENST00000442741 703 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXA3O43365 RPL36AP15-201ENST00000444514 266 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXA3O43365 TPT1P14-201ENST00000448018 505 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 SBDSP1-204ENST00000453858 737 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 HIGD1AP8-201ENST00000453927 274 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 C1DP4-201ENST00000455429 424 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AC087312.1-201ENST00000471411 480 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 RBM43P1-201ENST00000476891 1081 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AC013356.1-201ENST00000489027 564 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 EIF3LP3-201ENST00000495197 822 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AC091951.2-201ENST00000500762 203 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC4.74□□□□□ -1.65
HOXA3O43365 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC4.74□□□□□ -1.65
HOXA3O43365 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXA3O43365 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXA3O43365 MTND1P35-201ENST00000526739 508 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AC104383.1-201ENST00000530297 370 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC4.74□□□□□ -1.65
HOXA3O43365 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXA3O43365 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXA3O43365 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.74□□□□□ -1.65
HOXA3O43365 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXA3O43365 MIR4489-201ENST00000578869 62 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AC090312.1-201ENST00000580637 348 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 MIR4505-201ENST00000582238 73 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AC119403.2-201ENST00000590960 598 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXA3O43365 PSMA6P4-201ENST00000603247 718 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AC245014.2-201ENST00000603689 287 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AL589674.2-201ENST00000604304 337 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXA3O43365 AC246785.4-201ENST00000605374 287 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AC016727.1-205ENST00000605437 569 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXA3O43365 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HOXA3O43365 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXA3O43365 AL020991.1-201ENST00000612314 373 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AL139099.4-201ENST00000614802 114 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AC009033.1-201ENST00000624279 431 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AC091905.1-201ENST00000624400 311 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 MIR1321-201ENST00000637766 79 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXA3O43365 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXA3O43365 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HOXA3O43365 AC092692.1-201ENST00000623625 2595 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 AC097504.1-201ENST00000515103 2415 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HOXA3O43365 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
HOXA3O43365 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXA3O43365 AC009313.2-201ENST00000417893 1941 ntBASIC4.74□□□□□ -1.65
HOXA3O43365 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HOXA3O43365 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXA3O43365 AC140134.1-201ENST00000511830 3544 ntBASIC4.73□□□□□ -1.65
HOXA3O43365 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HOXA3O43365 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
HOXA3O43365 NLRP3P1-201ENST00000622303 1785 ntBASIC4.73□□□□□ -1.65
HOXA3O43365 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HOXA3O43365 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HOXA3O43365 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HOXA3O43365 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXA3O43365 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXA3O43365 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXA3O43365 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXA3O43365 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC4.73□□□□□ -1.65
HOXA3O43365 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HOXA3O43365 SMG1P7-201ENST00000565246 2704 ntBASIC4.73□□□□□ -1.65
HOXA3O43365 AC232271.1-201ENST00000602455 2715 ntBASIC4.73□□□□□ -1.65
HOXA3O43365 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXA3O43365 GNG5P1-201ENST00000255500 204 ntBASIC4.73□□□□□ -1.65
HOXA3O43365 CBX3P1-201ENST00000325243 554 ntBASIC4.73□□□□□ -1.65
HOXA3O43365 OR9K1P-201ENST00000326513 941 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms