Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AL672167.1-206ENST00000356293 943 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 RNU6-115P-201ENST00000364310 107 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 RNU4-75P-201ENST00000364621 146 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 IL6-206ENST00000407492 926 ntTSL 3 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 RPL7P8-201ENST00000411964 730 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AL590139.1-201ENST00000416267 400 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AF186996.5-201ENST00000418098 904 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AC245028.1-201ENST00000423259 256 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 RPL12P18-201ENST00000437175 325 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 FHP1-201ENST00000442741 703 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 RPL23AP35-201ENST00000451906 501 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 OR6C5P-201ENST00000452388 923 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 NDUFA5P7-201ENST00000452914 242 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 RPS29P33-201ENST00000456717 146 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 RN7SL738P-201ENST00000470264 297 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AC006463.2-201ENST00000473326 348 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AC025674.1-201ENST00000507074 324 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AC097486.1-201ENST00000515331 210 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 OR7K1P-201ENST00000546439 926 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 SULT1C2P2-201ENST00000562517 294 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 UBE2FP2-201ENST00000566646 462 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 MIR3667-201ENST00000581025 74 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 RN7SL52P-201ENST00000584271 284 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AC073544.2-201ENST00000601155 540 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AL353600.1-201ENST00000608148 251 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AL161616.1-201ENST00000611867 286 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 uc_338.18-201ENST00000615451 175 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 RN7SL722P-201ENST00000617780 284 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 RN7SL565P-201ENST00000618246 284 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AC026634.1-201ENST00000634369 198 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AC099063.3-201ENST00000642066 185 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 KARSP3-201ENST00000571212 1504 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 AC092104.1-201ENST00000497346 1441 ntBASIC5.22□□□□□ -1.57
TDP1Q9NUW8 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TDP1Q9NUW8 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
TDP1Q9NUW8 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
TDP1Q9NUW8 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
TDP1Q9NUW8 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
TDP1Q9NUW8 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
TDP1Q9NUW8 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
TDP1Q9NUW8 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 RN7SKP145-201ENST00000363291 303 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 MIR192-201ENST00000384915 110 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 MIR92A2-201ENST00000385299 75 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 CYCSP45-201ENST00000402289 315 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AL390316.1-201ENST00000406279 553 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 MIR1284-201ENST00000408337 120 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 TPMTP3-201ENST00000411928 735 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AL807761.1-201ENST00000417622 171 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AC009237.2-201ENST00000421358 284 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 MTCO3P1-205ENST00000422088 832 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 MED14P1-201ENST00000430517 648 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 CBX1P2-201ENST00000453841 458 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 NDUFA12P1-201ENST00000455914 406 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 RPS15AP1-201ENST00000457423 391 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 135 ms