Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 RNU2-65P-201ENST00000410162 185 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 MTND2P15-201ENST00000418575 892 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 RPS26P40-201ENST00000435209 294 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 AC006994.1-201ENST00000438212 839 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 RPL7P1-201ENST00000468161 747 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 RPS3AP14-201ENST00000483907 780 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 AC008759.1-201ENST00000589783 983 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 AL049634.3-201ENST00000604968 457 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 BCLAF1P1-201ENST00000505813 2752 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 HLA-N-201ENST00000437516 135 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 STX3-204ENST00000530221 534 ntTSL 5 BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 HSPA8P19-201ENST00000505359 1517 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 FRG1CP-201ENST00000358464 769 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 RPL23AP48-201ENST00000406913 488 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 SEPT7P3-201ENST00000455017 621 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 AC090013.1-201ENST00000485147 480 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 CYCSP28-201ENST00000534284 321 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC1.16□□□□□ -2.22
SYNE1Q8NF91 AC097505.1-201ENST00000610199 565 ntBASIC1.16□□□□□ -2.22
SYNE1Q8NF91 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 DDX18P4-201ENST00000511690 1966 ntBASIC1.15□□□□□ -2.22
SYNE1Q8NF91 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 AL133244.1-201ENST00000456007 258 ntBASIC1.15□□□□□ -2.22
SYNE1Q8NF91 RN7SL601P-201ENST00000471221 293 ntBASIC1.15□□□□□ -2.22
SYNE1Q8NF91 OSBPL9P2-201ENST00000526582 1228 ntBASIC1.15□□□□□ -2.22
SYNE1Q8NF91 AL033523.1-201ENST00000605153 153 ntBASIC1.15□□□□□ -2.22
SYNE1Q8NF91 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 AC107294.1-201ENST00000609524 467 ntBASIC1.15□□□□□ -2.22
SYNE1Q8NF91 AC023509.5-201ENST00000617434 807 ntBASIC1.15□□□□□ -2.22
SYNE1Q8NF91 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 SNORA60-201ENST00000362396 134 ntBASIC1.15□□□□□ -2.22
SYNE1Q8NF91 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 DYNLL1P7-201ENST00000429273 258 ntBASIC1.15□□□□□ -2.22
SYNE1Q8NF91 AL049873.1-201ENST00000480540 376 ntBASIC1.15□□□□□ -2.22
SYNE1Q8NF91 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC1.15□□□□□ -2.22
SYNE1Q8NF91 MIR5680-201ENST00000577577 84 ntBASIC1.15□□□□□ -2.22
SYNE1Q8NF91 MIR3922-201ENST00000585192 84 ntBASIC1.15□□□□□ -2.22
SYNE1Q8NF91 MIR7106-201ENST00000612419 65 ntBASIC1.15□□□□□ -2.22
SYNE1Q8NF91 XKRY2-202ENST00000623874 1581 ntBASIC1.15□□□□□ -2.23
SYNE1Q8NF91 XKRY-202ENST00000624960 1581 ntBASIC1.15□□□□□ -2.23
SYNE1Q8NF91 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC1.15□□□□□ -2.23
SYNE1Q8NF91 AC067945.1-201ENST00000342609 618 ntBASIC1.15□□□□□ -2.23
SYNE1Q8NF91 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC1.15□□□□□ -2.23
SYNE1Q8NF91 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC1.15□□□□□ -2.23
SYNE1Q8NF91 RPL32P28-201ENST00000443577 397 ntBASIC1.15□□□□□ -2.23
SYNE1Q8NF91 AC008155.2-201ENST00000464337 397 ntBASIC1.15□□□□□ -2.23
SYNE1Q8NF91 AC022795.1-201ENST00000473808 480 ntBASIC1.15□□□□□ -2.23
SYNE1Q8NF91 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC1.15□□□□□ -2.23
SYNE1Q8NF91 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
SYNE1Q8NF91 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC1.15□□□□□ -2.23
SYNE1Q8NF91 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC1.15□□□□□ -2.23
SYNE1Q8NF91 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
SYNE1Q8NF91 MFSD8-242ENST00000641690 4199 ntBASIC1.15□□□□□ -2.23
SYNE1Q8NF91 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
SYNE1Q8NF91 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
SYNE1Q8NF91 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
SYNE1Q8NF91 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC1.15□□□□□ -2.23
SYNE1Q8NF91 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC1.15□□□□□ -2.23
SYNE1Q8NF91 UBE2V1P2-201ENST00000397758 440 ntBASIC1.15□□□□□ -2.23
SYNE1Q8NF91 SSR1P1-201ENST00000407630 814 ntBASIC1.15□□□□□ -2.23
SYNE1Q8NF91 Z97055.1-201ENST00000419730 712 ntBASIC1.15□□□□□ -2.23
SYNE1Q8NF91 AC092641.1-201ENST00000440229 772 ntBASIC1.15□□□□□ -2.23
SYNE1Q8NF91 Z75741.1-201ENST00000446793 314 ntBASIC1.15□□□□□ -2.23
SYNE1Q8NF91 AC084198.1-201ENST00000477747 402 ntBASIC1.15□□□□□ -2.23
SYNE1Q8NF91 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC1.15□□□□□ -2.23
SYNE1Q8NF91 RPL7L1P13-201ENST00000511702 739 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms