Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC092709.1-201ENST00000521355 1045 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.35□□□□□ -1.55
USP39Q53GS9 AP001207.1-201ENST00000524051 481 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.35□□□□□ -1.55
USP39Q53GS9 GSTP1P1-201ENST00000548078 319 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 AC004217.3-201ENST00000551552 878 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 MTCO1P40-201ENST00000574371 625 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.35□□□□□ -1.55
USP39Q53GS9 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.35□□□□□ -1.55
USP39Q53GS9 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.35□□□□□ -1.55
USP39Q53GS9 IMMP1LP1-201ENST00000605170 488 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 AC093799.2-201ENST00000610062 578 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 AC010632.3-201ENST00000611377 369 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 AC090970.3-201ENST00000612566 866 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 AC126177.8-201ENST00000618339 1015 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
USP39Q53GS9 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP39Q53GS9 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
USP39Q53GS9 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
USP39Q53GS9 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
USP39Q53GS9 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.35□□□□□ -1.55
USP39Q53GS9 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.35□□□□□ -1.55
USP39Q53GS9 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.35□□□□□ -1.55
USP39Q53GS9 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
USP39Q53GS9 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
USP39Q53GS9 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP39Q53GS9 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.35□□□□□ -1.55
USP39Q53GS9 AL078621.3-201ENST00000623707 2042 ntBASIC5.35□□□□□ -1.55
USP39Q53GS9 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.34□□□□□ -1.55
USP39Q53GS9 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
USP39Q53GS9 ATP8A2P3-201ENST00000426792 1536 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 AC007342.7-201ENST00000624610 2337 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP39Q53GS9 AP001029.2-203ENST00000589795 4910 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP39Q53GS9 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
USP39Q53GS9 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
USP39Q53GS9 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.34□□□□□ -1.55
USP39Q53GS9 OR1L1-202ENST00000373686 1083 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.34□□□□□ -1.55
USP39Q53GS9 RNU6-1011P-201ENST00000384668 107 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 CYB5AP4-201ENST00000396692 399 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC5.34□□□□□ -1.55
USP39Q53GS9 RNA5SP296-201ENST00000410523 111 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 RPL26P37-201ENST00000411983 438 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 AC010385.1-201ENST00000412374 256 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC5.34□□□□□ -1.55
USP39Q53GS9 BTF3P9-201ENST00000418784 283 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC5.34□□□□□ -1.55
USP39Q53GS9 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC5.34□□□□□ -1.55
USP39Q53GS9 AC009480.2-201ENST00000422916 432 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC5.34□□□□□ -1.55
USP39Q53GS9 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC5.34□□□□□ -1.55
USP39Q53GS9 RPL7P56-201ENST00000429441 717 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC5.34□□□□□ -1.55
USP39Q53GS9 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC5.34□□□□□ -1.55
USP39Q53GS9 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC5.34□□□□□ -1.55
USP39Q53GS9 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.34□□□□□ -1.55
USP39Q53GS9 MTND4LP16-201ENST00000440828 295 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 RAB11AP1-201ENST00000442978 646 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 AL118496.2-201ENST00000448300 230 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 AL591363.1-201ENST00000450091 483 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 AC009220.1-201ENST00000451614 275 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC5.34□□□□□ -1.55
USP39Q53GS9 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.34□□□□□ -1.55
USP39Q53GS9 AC025459.1-201ENST00000504072 156 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 AC010587.2-201ENST00000511727 448 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 RNA5SP373-201ENST00000517271 95 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.34□□□□□ -1.55
USP39Q53GS9 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC5.34□□□□□ -1.55
USP39Q53GS9 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.34□□□□□ -1.55
USP39Q53GS9 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC5.34□□□□□ -1.55
USP39Q53GS9 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC5.34□□□□□ -1.55
USP39Q53GS9 ZNF519P2-201ENST00000557032 169 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 FGF7P1-201ENST00000582820 288 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 RN7SL52P-201ENST00000584271 284 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.34□□□□□ -1.55
USP39Q53GS9 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.34□□□□□ -1.55
USP39Q53GS9 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.34□□□□□ -1.55
USP39Q53GS9 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.34□□□□□ -1.55
USP39Q53GS9 AC087783.2-201ENST00000605070 562 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC5.34□□□□□ -1.55
USP39Q53GS9 AL159169.3-201ENST00000608871 561 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 RN7SL722P-201ENST00000617780 284 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 RN7SL565P-201ENST00000618246 284 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 AC022509.4-201ENST00000621404 572 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 MFSD8-245ENST00000641743 948 ntBASIC5.34□□□□□ -1.55
USP39Q53GS9 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP39Q53GS9 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP39Q53GS9 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
USP39Q53GS9 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.34□□□□□ -1.55
USP39Q53GS9 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.34□□□□□ -1.56
USP39Q53GS9 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
USP39Q53GS9 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.56
USP39Q53GS9 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP39Q53GS9 SOCS5P3-201ENST00000425115 1576 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP39Q53GS9 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP39Q53GS9 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms