Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC113403.1-201ENST00000604910 193 ntBASIC4.06□□□□□ -1.76
SOX3P41225 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.06□□□□□ -1.76
SOX3P41225 AL031666.3-201ENST00000609320 1006 ntBASIC4.06□□□□□ -1.76
SOX3P41225 CYCSP41-201ENST00000616920 296 ntBASIC4.06□□□□□ -1.76
SOX3P41225 AC139769.3-201ENST00000618383 175 ntBASIC4.06□□□□□ -1.76
SOX3P41225 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.06□□□□□ -1.76
SOX3P41225 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
SOX3P41225 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SOX3P41225 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.06□□□□□ -1.76
SOX3P41225 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.06□□□□□ -1.76
SOX3P41225 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.06□□□□□ -1.76
SOX3P41225 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
SOX3P41225 AC006042.3-201ENST00000454684 1469 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC100871.1-201ENST00000507871 1456 ntBASIC4.05□□□□□ -1.76
SOX3P41225 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SOX3P41225 AC096656.1-201ENST00000623826 1364 ntBASIC4.05□□□□□ -1.76
SOX3P41225 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
SOX3P41225 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.05□□□□□ -1.76
SOX3P41225 MTND4P31-201ENST00000425607 1343 ntBASIC4.05□□□□□ -1.76
SOX3P41225 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
SOX3P41225 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
SOX3P41225 SNORD74.4-201ENST00000364129 80 ntBASIC4.05□□□□□ -1.76
SOX3P41225 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
SOX3P41225 AC068538.1-201ENST00000376856 336 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AL603865.2-201ENST00000401679 213 ntBASIC4.05□□□□□ -1.76
SOX3P41225 LAP3P1-201ENST00000403648 294 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AL078604.1-201ENST00000404609 466 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AL590290.1-201ENST00000405336 380 ntBASIC4.05□□□□□ -1.76
SOX3P41225 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC4.05□□□□□ -1.76
SOX3P41225 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.05□□□□□ -1.76
SOX3P41225 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.05□□□□□ -1.76
SOX3P41225 LIPT1P1-201ENST00000415870 1186 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.05□□□□□ -1.76
SOX3P41225 AC004552.1-201ENST00000419089 348 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC062016.2-201ENST00000420950 676 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC246680.2-201ENST00000422106 389 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC114973.1-201ENST00000429057 632 ntBASIC4.05□□□□□ -1.76
SOX3P41225 YWHAEP5-201ENST00000431545 765 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC4.05□□□□□ -1.76
SOX3P41225 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.05□□□□□ -1.76
SOX3P41225 CBX1P4-201ENST00000439415 457 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AL353748.1-201ENST00000440753 474 ntBASIC4.05□□□□□ -1.76
SOX3P41225 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.05□□□□□ -1.76
SOX3P41225 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
SOX3P41225 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SOX3P41225 DDX39BP2-208ENST00000453923 258 ntBASIC4.05□□□□□ -1.76
SOX3P41225 RPS26P3-201ENST00000470205 348 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC090543.2-201ENST00000483963 348 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC004057.1-201ENST00000485827 348 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC005912.1-201ENST00000495392 255 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC096571.1-202ENST00000506634 735 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC4.05□□□□□ -1.76
SOX3P41225 AC006499.6-201ENST00000511169 607 ntBASIC4.05□□□□□ -1.76
SOX3P41225 RNU6-276P-201ENST00000516114 96 ntBASIC4.05□□□□□ -1.76
SOX3P41225 RNU6-347P-201ENST00000516658 105 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.05□□□□□ -1.76
SOX3P41225 AP001207.2-201ENST00000519490 539 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.05□□□□□ -1.76
SOX3P41225 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.05□□□□□ -1.76
SOX3P41225 AC006518.2-201ENST00000542513 940 ntBASIC4.05□□□□□ -1.76
SOX3P41225 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.05□□□□□ -1.76
SOX3P41225 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC4.05□□□□□ -1.76
SOX3P41225 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.05□□□□□ -1.76
SOX3P41225 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.05□□□□□ -1.76
SOX3P41225 AC068714.1-201ENST00000559623 800 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC4.05□□□□□ -1.76
SOX3P41225 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC4.05□□□□□ -1.76
SOX3P41225 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC4.05□□□□□ -1.76
SOX3P41225 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC4.05□□□□□ -1.76
SOX3P41225 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.05□□□□□ -1.76
SOX3P41225 MIR4509-3-201ENST00000578671 94 ntBASIC4.05□□□□□ -1.76
SOX3P41225 MIR4509-2-201ENST00000583920 94 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.05□□□□□ -1.76
SOX3P41225 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.05□□□□□ -1.76
SOX3P41225 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.05□□□□□ -1.76
SOX3P41225 AC079587.1-201ENST00000603846 277 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC005962.2-201ENST00000611427 652 ntBASIC4.05□□□□□ -1.76
SOX3P41225 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.05□□□□□ -1.76
SOX3P41225 AC114781.5-201ENST00000615297 108 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC006338.2-201ENST00000616864 791 ntBASIC4.05□□□□□ -1.76
SOX3P41225 MIR4509-1-201ENST00000618224 94 ntBASIC4.05□□□□□ -1.76
SOX3P41225 uc_338.13-201ENST00000618243 179 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.05□□□□□ -1.76
SOX3P41225 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
SOX3P41225 AC015726.3-201ENST00000624501 418 ntBASIC4.05□□□□□ -1.76
SOX3P41225 AP000843.1-201ENST00000624880 701 ntBASIC4.05□□□□□ -1.76
SOX3P41225 MIR6830-201ENST00000636015 70 ntBASIC4.05□□□□□ -1.76
SOX3P41225 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.05□□□□□ -1.76
SOX3P41225 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
SOX3P41225 AC073055.1-201ENST00000456901 1621 ntBASIC4.05□□□□□ -1.76
SOX3P41225 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.05□□□□□ -1.76
SOX3P41225 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SOX3P41225 AC010329.2-201ENST00000595195 2737 ntBASIC4.05□□□□□ -1.76
SOX3P41225 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
SOX3P41225 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
SOX3P41225 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
SOX3P41225 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SOX3P41225 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SOX3P41225 BX005019.1-201ENST00000561881 1810 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms