Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.43□□□□□ -1.7
COL5A3P25940 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.43□□□□□ -1.7
COL5A3P25940 RPL7P44-201ENST00000424827 742 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 HSPE1P27-201ENST00000430808 296 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 ATP5HP2-201ENST00000433885 485 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.43□□□□□ -1.7
COL5A3P25940 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.43□□□□□ -1.7
COL5A3P25940 RPL7P23-201ENST00000493874 747 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 EIF4BP1-201ENST00000554881 351 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 AL133457.1-201ENST00000564251 987 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 MIR4672-201ENST00000583126 81 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 AC067852.3-201ENST00000589177 561 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 MRPS35P3-201ENST00000603189 709 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 AC124312.4-201ENST00000605533 310 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 AC073657.2-201ENST00000605661 303 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 AC084036.1-201ENST00000609190 508 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 AC138932.5-201ENST00000617759 563 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 CR392039.4-201ENST00000624968 501 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
COL5A3P25940 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.43□□□□□ -1.7
COL5A3P25940 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
COL5A3P25940 AL121839.2-201ENST00000565058 6943 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL5A3P25940 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL5A3P25940 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL5A3P25940 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL5A3P25940 AL645937.1-201ENST00000641739 1652 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
COL5A3P25940 Y_RNA.510-201ENST00000384511 114 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 UBA52P6-201ENST00000399822 382 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 MTHFD2P2-201ENST00000407725 247 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.43□□□□□ -1.7
COL5A3P25940 UBE2V1P1-201ENST00000430836 445 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.43□□□□□ -1.7
COL5A3P25940 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 AC092809.1-201ENST00000441469 474 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.43□□□□□ -1.7
COL5A3P25940 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.43□□□□□ -1.7
COL5A3P25940 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.43□□□□□ -1.7
COL5A3P25940 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.43□□□□□ -1.7
COL5A3P25940 OR7M1P-201ENST00000608946 533 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.43□□□□□ -1.7
COL5A3P25940 MIR6852-201ENST00000621699 66 ntBASIC4.43□□□□□ -1.7
COL5A3P25940 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.43□□□□□ -1.7
COL5A3P25940 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC4.43□□□□□ -1.7
COL5A3P25940 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
COL5A3P25940 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL5A3P25940 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL5A3P25940 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL5A3P25940 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL5A3P25940 DDX6P1-205ENST00000441966 1436 ntBASIC4.42□□□□□ -1.7
COL5A3P25940 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL5A3P25940 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL5A3P25940 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
COL5A3P25940 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL5A3P25940 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
COL5A3P25940 AC063979.1-201ENST00000415539 377 ntBASIC4.42□□□□□ -1.7
COL5A3P25940 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.42□□□□□ -1.7
COL5A3P25940 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.42□□□□□ -1.7
COL5A3P25940 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.42□□□□□ -1.7
COL5A3P25940 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.42□□□□□ -1.7
COL5A3P25940 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.42□□□□□ -1.7
COL5A3P25940 EIF1P6-201ENST00000600054 334 ntBASIC4.42□□□□□ -1.7
COL5A3P25940 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
COL5A3P25940 AC020633.1-201ENST00000468439 2247 ntBASIC4.42□□□□□ -1.7
COL5A3P25940 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL5A3P25940 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL5A3P25940 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC4.41□□□□□ -1.7
COL5A3P25940 GNG5P5-201ENST00000420444 220 ntBASIC4.41□□□□□ -1.7
COL5A3P25940 RPL7P38-201ENST00000488396 739 ntBASIC4.41□□□□□ -1.7
COL5A3P25940 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.41□□□□□ -1.7
COL5A3P25940 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.41□□□□□ -1.7
COL5A3P25940 TCP11X3P-202ENST00000514289 1254 ntBASIC4.41□□□□□ -1.7
COL5A3P25940 AC006539.2-201ENST00000601729 572 ntBASIC4.41□□□□□ -1.7
COL5A3P25940 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.41□□□□□ -1.7
COL5A3P25940 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL5A3P25940 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL5A3P25940 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL5A3P25940 AC007656.2-201ENST00000624902 4547 ntBASIC4.41□□□□□ -1.7
COL5A3P25940 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.41□□□□□ -1.7
COL5A3P25940 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL5A3P25940 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.41□□□□□ -1.7
COL5A3P25940 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
COL5A3P25940 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
COL5A3P25940 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.41□□□□□ -1.7
COL5A3P25940 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.41□□□□□ -1.7
COL5A3P25940 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL5A3P25940 SNORA38.1-201ENST00000364172 131 ntBASIC4.41□□□□□ -1.7
COL5A3P25940 U3.19-201ENST00000390893 196 ntBASIC4.41□□□□□ -1.7
COL5A3P25940 RSL24D1P1-201ENST00000404972 493 ntBASIC4.41□□□□□ -1.7
COL5A3P25940 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL5A3P25940 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.41□□□□□ -1.7
COL5A3P25940 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.41□□□□□ -1.7
COL5A3P25940 AC097262.1-201ENST00000452559 548 ntBASIC4.41□□□□□ -1.7
COL5A3P25940 HMGB1P21-201ENST00000502313 581 ntBASIC4.41□□□□□ -1.7
COL5A3P25940 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.41□□□□□ -1.7
COL5A3P25940 Vault.1-201ENST00000516474 102 ntBASIC4.41□□□□□ -1.7
COL5A3P25940 IGKV2-26-201ENST00000518305 343 ntBASIC4.41□□□□□ -1.7
COL5A3P25940 AC010680.3-201ENST00000604215 520 ntBASIC4.41□□□□□ -1.7
COL5A3P25940 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms