Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC092013.1-201ENST00000438795 332 ntBASIC4□□□□□ -1.77
HOXD4P09016 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4□□□□□ -1.77
HOXD4P09016 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4□□□□□ -1.77
HOXD4P09016 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4□□□□□ -1.77
HOXD4P09016 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4□□□□□ -1.77
HOXD4P09016 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
HOXD4P09016 CYCSP20-201ENST00000473154 315 ntBASIC4□□□□□ -1.77
HOXD4P09016 SETP6-201ENST00000479329 568 ntBASIC4□□□□□ -1.77
HOXD4P09016 AC091167.1-201ENST00000492017 396 ntBASIC4□□□□□ -1.77
HOXD4P09016 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4□□□□□ -1.77
HOXD4P09016 AC010627.1-201ENST00000503819 1294 ntBASIC4□□□□□ -1.77
HOXD4P09016 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4□□□□□ -1.77
HOXD4P09016 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4□□□□□ -1.77
HOXD4P09016 IGHVIII-38-1-201ENST00000521454 282 ntBASIC4□□□□□ -1.77
HOXD4P09016 OSBPL9P2-201ENST00000526582 1228 ntBASIC4□□□□□ -1.77
HOXD4P09016 AP003066.2-201ENST00000529375 555 ntBASIC4□□□□□ -1.77
HOXD4P09016 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4□□□□□ -1.77
HOXD4P09016 CYCSP29-201ENST00000533731 318 ntBASIC4□□□□□ -1.77
HOXD4P09016 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4□□□□□ -1.77
HOXD4P09016 AC025884.1-201ENST00000556034 378 ntBASIC4□□□□□ -1.77
HOXD4P09016 AL121594.4-201ENST00000556211 1196 ntBASIC4□□□□□ -1.77
HOXD4P09016 YWHAZP1-201ENST00000556286 722 ntBASIC4□□□□□ -1.77
HOXD4P09016 AC106785.1-201ENST00000565935 262 ntBASIC4□□□□□ -1.77
HOXD4P09016 AC090666.1-201ENST00000578241 445 ntBASIC4□□□□□ -1.77
HOXD4P09016 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXD4P09016 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4□□□□□ -1.77
HOXD4P09016 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC4□□□□□ -1.77
HOXD4P09016 AC091057.3-201ENST00000602684 733 ntBASIC4□□□□□ -1.77
HOXD4P09016 AC008759.3-201ENST00000613300 508 ntBASIC4□□□□□ -1.77
HOXD4P09016 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC4□□□□□ -1.77
HOXD4P09016 AC015804.1-201ENST00000622935 435 ntBASIC4□□□□□ -1.77
HOXD4P09016 AC034229.5-201ENST00000624258 185 ntBASIC4□□□□□ -1.77
HOXD4P09016 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXD4P09016 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4□□□□□ -1.77
HOXD4P09016 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4□□□□□ -1.77
HOXD4P09016 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXD4P09016 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXD4P09016 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
HOXD4P09016 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXD4P09016 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4□□□□□ -1.77
HOXD4P09016 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
HOXD4P09016 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4□□□□□ -1.77
HOXD4P09016 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXD4P09016 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4□□□□□ -1.77
HOXD4P09016 AC018555.1-201ENST00000567548 1980 ntBASIC4□□□□□ -1.77
HOXD4P09016 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXD4P09016 EIF2AP4-201ENST00000424793 1781 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 HSPD1P14-201ENST00000432666 1618 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXD4P09016 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXD4P09016 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
HOXD4P09016 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD4P09016 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD4P09016 MIR23B-201ENST00000384832 97 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 AC025750.1-201ENST00000399891 379 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 ZNF603P-201ENST00000405613 487 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 AC062016.2-201ENST00000420950 676 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 AL590609.2-201ENST00000421430 368 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXD4P09016 TRBV26OR9-2-201ENST00000432077 293 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXD4P09016 AL359073.1-201ENST00000448036 403 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXD4P09016 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXD4P09016 RNU6-1218P-201ENST00000458990 108 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 UQCRHP4-201ENST00000471686 272 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 RPL23AP65-201ENST00000475608 468 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 SYT14P1-201ENST00000481459 721 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 AC105137.1-201ENST00000484355 562 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 AC108729.1-201ENST00000487812 947 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 GTF2IP9-201ENST00000502460 301 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 OR5H3P-201ENST00000502817 919 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 AL592156.1-201ENST00000508758 304 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXD4P09016 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD4P09016 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXD4P09016 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.99□□□□□ -1.77
HOXD4P09016 AP001372.4-201ENST00000524889 472 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXD4P09016 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXD4P09016 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXD4P09016 BNIP3P22-201ENST00000593399 556 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 AC079587.1-201ENST00000603846 277 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 AC113403.1-201ENST00000604910 193 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 HMGB1P50-201ENST00000605814 607 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 AC008966.2-201ENST00000606157 453 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 AC025175.1-201ENST00000606482 759 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXD4P09016 AC116447.1-201ENST00000613153 453 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 MIR3653-201ENST00000625572 110 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXD4P09016 AC090971.4-201ENST00000560291 1800 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
HOXD4P09016 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD4P09016 ASNSP1-204ENST00000641977 1664 ntBASIC3.99□□□□□ -1.77
HOXD4P09016 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
HOXD4P09016 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD4P09016 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD4P09016 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXD4P09016 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms