Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SNORA62.6-201ENST00000606322 83 ntBASIC4.29□□□□□ -1.72
MSH4O15457 AC100814.1-201ENST00000606963 623 ntBASIC4.29□□□□□ -1.72
MSH4O15457 AL121772.2-201ENST00000614331 297 ntBASIC4.29□□□□□ -1.72
MSH4O15457 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
MSH4O15457 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
MSH4O15457 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
MSH4O15457 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSH4O15457 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
MSH4O15457 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSH4O15457 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSH4O15457 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
MSH4O15457 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSH4O15457 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
MSH4O15457 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSH4O15457 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSH4O15457 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
MSH4O15457 SNORA27.3-201ENST00000364937 134 ntBASIC4.28□□□□□ -1.72
MSH4O15457 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSH4O15457 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
MSH4O15457 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSH4O15457 RN7SKP27-201ENST00000410684 333 ntBASIC4.28□□□□□ -1.72
MSH4O15457 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
MSH4O15457 AC245517.2-201ENST00000442890 346 ntBASIC4.28□□□□□ -1.72
MSH4O15457 AC104306.1-201ENST00000449702 371 ntBASIC4.28□□□□□ -1.72
MSH4O15457 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC4.28□□□□□ -1.72
MSH4O15457 HGF-207ENST00000453018 721 ntTSL 3 BASIC4.28□□□□□ -1.72
MSH4O15457 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.28□□□□□ -1.72
MSH4O15457 AC139783.2-201ENST00000504847 1145 ntBASIC4.28□□□□□ -1.72
MSH4O15457 AC108471.1-201ENST00000513977 287 ntBASIC4.28□□□□□ -1.72
MSH4O15457 HNRNPKP5-201ENST00000515300 253 ntBASIC4.28□□□□□ -1.72
MSH4O15457 AC023632.4-201ENST00000517783 191 ntBASIC4.28□□□□□ -1.72
MSH4O15457 MYL12AP1-201ENST00000518490 515 ntBASIC4.28□□□□□ -1.72
MSH4O15457 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
MSH4O15457 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.28□□□□□ -1.72
MSH4O15457 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.28□□□□□ -1.72
MSH4O15457 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC4.28□□□□□ -1.72
MSH4O15457 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.28□□□□□ -1.72
MSH4O15457 AL133247.2-201ENST00000603236 482 ntBASIC4.28□□□□□ -1.72
MSH4O15457 AC135803.1-201ENST00000608748 565 ntBASIC4.28□□□□□ -1.72
MSH4O15457 LINC00901.1-201ENST00000617252 152 ntBASIC4.28□□□□□ -1.72
MSH4O15457 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.28□□□□□ -1.72
MSH4O15457 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.28□□□□□ -1.72
MSH4O15457 AC039056.2-201ENST00000622261 511 ntBASIC4.28□□□□□ -1.72
MSH4O15457 AL356863.1-201ENST00000623378 1080 ntBASIC4.28□□□□□ -1.72
MSH4O15457 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
MSH4O15457 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.28□□□□□ -1.72
MSH4O15457 AC119674.1-212ENST00000641155 993 ntBASIC4.28□□□□□ -1.72
MSH4O15457 AC024560.2-201ENST00000507981 1497 ntBASIC4.28□□□□□ -1.72
MSH4O15457 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.28□□□□□ -1.72
MSH4O15457 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
MSH4O15457 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
MSH4O15457 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSH4O15457 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.27□□□□□ -1.73
MSH4O15457 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSH4O15457 AL445437.1-201ENST00000623157 3087 ntBASIC4.27□□□□□ -1.73
MSH4O15457 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
MSH4O15457 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSH4O15457 MIR448-201ENST00000362131 111 ntBASIC4.27□□□□□ -1.73
MSH4O15457 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC4.27□□□□□ -1.73
MSH4O15457 RNU6-532P-201ENST00000384318 107 ntBASIC4.27□□□□□ -1.73
MSH4O15457 RNU6-225P-201ENST00000384613 103 ntBASIC4.27□□□□□ -1.73
MSH4O15457 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
MSH4O15457 SNORA68.2-201ENST00000391263 128 ntBASIC4.27□□□□□ -1.73
MSH4O15457 AL590704.1-201ENST00000402856 794 ntBASIC4.27□□□□□ -1.73
MSH4O15457 RNA5SP104-201ENST00000410989 118 ntBASIC4.27□□□□□ -1.73
MSH4O15457 SNORA57.3-201ENST00000411095 141 ntBASIC4.27□□□□□ -1.73
MSH4O15457 AC009302.1-201ENST00000417147 390 ntBASIC4.27□□□□□ -1.73
MSH4O15457 AL590609.2-201ENST00000421430 368 ntBASIC4.27□□□□□ -1.73
MSH4O15457 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.27□□□□□ -1.73
MSH4O15457 AC007389.2-201ENST00000434630 306 ntBASIC4.27□□□□□ -1.73
MSH4O15457 AC239367.2-201ENST00000447309 705 ntBASIC4.27□□□□□ -1.73
MSH4O15457 RNA5SP164-201ENST00000516533 110 ntBASIC4.27□□□□□ -1.73
MSH4O15457 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.27□□□□□ -1.73
MSH4O15457 RNU6-1308P-201ENST00000516817 103 ntBASIC4.27□□□□□ -1.73
MSH4O15457 AC008802.1-201ENST00000519121 791 ntBASIC4.27□□□□□ -1.73
MSH4O15457 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC4.27□□□□□ -1.73
MSH4O15457 HIGD1AP18-201ENST00000520730 278 ntBASIC4.27□□□□□ -1.73
MSH4O15457 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC4.27□□□□□ -1.73
MSH4O15457 MED28P5-201ENST00000528254 438 ntBASIC4.27□□□□□ -1.73
MSH4O15457 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC4.27□□□□□ -1.73
MSH4O15457 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC4.27□□□□□ -1.73
MSH4O15457 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.27□□□□□ -1.73
MSH4O15457 AL139395.1-201ENST00000603662 160 ntBASIC4.27□□□□□ -1.73
MSH4O15457 AL137849.1-201ENST00000604767 169 ntBASIC4.27□□□□□ -1.73
MSH4O15457 RNU1-30P-201ENST00000606575 163 ntBASIC4.27□□□□□ -1.73
MSH4O15457 AP003392.5-201ENST00000607857 415 ntBASIC4.27□□□□□ -1.73
MSH4O15457 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.27□□□□□ -1.73
MSH4O15457 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.27□□□□□ -1.73
MSH4O15457 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
MSH4O15457 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.27□□□□□ -1.73
MSH4O15457 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.27□□□□□ -1.73
MSH4O15457 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
MSH4O15457 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
MSH4O15457 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSH4O15457 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSH4O15457 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.26□□□□□ -1.73
MSH4O15457 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSH4O15457 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSH4O15457 MIR554-201ENST00000384874 96 ntBASIC4.26□□□□□ -1.73
MSH4O15457 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms