Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
CFAP54Q96N23 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.01■□□□□ 0.63
CFAP54Q96N23 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.01■□□□□ 0.63
CFAP54Q96N23 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.01■□□□□ 0.63
CFAP54Q96N23 AL391422.3-201ENST00000603791 2761 ntBASIC19.01■□□□□ 0.63
CFAP54Q96N23 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.01■□□□□ 0.63
CFAP54Q96N23 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CFAP54Q96N23 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CFAP54Q96N23 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CFAP54Q96N23 AL773604.1-201ENST00000617417 272 ntBASIC19.01■□□□□ 0.63
CFAP54Q96N23 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CFAP54Q96N23 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CFAP54Q96N23 AC092667.1-201ENST00000434301 2586 ntBASIC19.01■□□□□ 0.63
CFAP54Q96N23 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CFAP54Q96N23 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CFAP54Q96N23 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CFAP54Q96N23 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CFAP54Q96N23 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CFAP54Q96N23 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.01■□□□□ 0.63
CFAP54Q96N23 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CFAP54Q96N23 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CFAP54Q96N23 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CFAP54Q96N23 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CFAP54Q96N23 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CFAP54Q96N23 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CFAP54Q96N23 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CFAP54Q96N23 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CFAP54Q96N23 FOSL1P1-201ENST00000511041 816 ntBASIC19■□□□□ 0.63
CFAP54Q96N23 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19■□□□□ 0.63
CFAP54Q96N23 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19■□□□□ 0.63
CFAP54Q96N23 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19■□□□□ 0.63
CFAP54Q96N23 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19■□□□□ 0.63
CFAP54Q96N23 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19■□□□□ 0.63
CFAP54Q96N23 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19■□□□□ 0.63
CFAP54Q96N23 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CFAP54Q96N23 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
CFAP54Q96N23 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CFAP54Q96N23 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19■□□□□ 0.63
CFAP54Q96N23 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19■□□□□ 0.63
CFAP54Q96N23 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CFAP54Q96N23 Z85996.1-201ENST00000494644 937 ntBASIC19■□□□□ 0.63
CFAP54Q96N23 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC19■□□□□ 0.63
CFAP54Q96N23 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19■□□□□ 0.63
CFAP54Q96N23 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19■□□□□ 0.63
CFAP54Q96N23 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CFAP54Q96N23 TERC-201ENST00000602385 541 ntBASIC19■□□□□ 0.63
CFAP54Q96N23 AL390719.2-201ENST00000606993 987 ntBASIC19■□□□□ 0.63
CFAP54Q96N23 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19■□□□□ 0.63
CFAP54Q96N23 KRT8P36-201ENST00000489121 1440 ntBASIC19■□□□□ 0.63
CFAP54Q96N23 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19■□□□□ 0.63
CFAP54Q96N23 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CFAP54Q96N23 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CFAP54Q96N23 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19■□□□□ 0.63
CFAP54Q96N23 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CFAP54Q96N23 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CFAP54Q96N23 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CFAP54Q96N23 LINC00167-201ENST00000530583 1419 ntBASIC18.99■□□□□ 0.63
CFAP54Q96N23 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.99■□□□□ 0.63
CFAP54Q96N23 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.99■□□□□ 0.63
CFAP54Q96N23 AC131212.4-201ENST00000623606 975 ntBASIC18.99■□□□□ 0.63
CFAP54Q96N23 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CFAP54Q96N23 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
CFAP54Q96N23 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CFAP54Q96N23 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CFAP54Q96N23 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.99■□□□□ 0.63
CFAP54Q96N23 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
CFAP54Q96N23 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CFAP54Q96N23 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.99■□□□□ 0.63
CFAP54Q96N23 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.99■□□□□ 0.63
CFAP54Q96N23 RNPS1P1-201ENST00000507437 918 ntBASIC18.99■□□□□ 0.63
CFAP54Q96N23 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CFAP54Q96N23 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.99■□□□□ 0.63
CFAP54Q96N23 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.99■□□□□ 0.63
CFAP54Q96N23 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CFAP54Q96N23 SAPCD2P3-201ENST00000455031 850 ntBASIC18.99■□□□□ 0.63
CFAP54Q96N23 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.99■□□□□ 0.63
CFAP54Q96N23 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.99■□□□□ 0.63
CFAP54Q96N23 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CFAP54Q96N23 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CFAP54Q96N23 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CFAP54Q96N23 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.98■□□□□ 0.63
CFAP54Q96N23 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.98■□□□□ 0.63
CFAP54Q96N23 AC098831.1-202ENST00000438821 336 ntBASIC18.98■□□□□ 0.63
CFAP54Q96N23 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.98■□□□□ 0.63
CFAP54Q96N23 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CFAP54Q96N23 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
CFAP54Q96N23 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CFAP54Q96N23 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.98■□□□□ 0.63
CFAP54Q96N23 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CFAP54Q96N23 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CFAP54Q96N23 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.98■□□□□ 0.63
CFAP54Q96N23 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CFAP54Q96N23 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CFAP54Q96N23 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CFAP54Q96N23 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.98■□□□□ 0.63
CFAP54Q96N23 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.98■□□□□ 0.63
CFAP54Q96N23 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CFAP54Q96N23 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.97■□□□□ 0.63
CFAP54Q96N23 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.97■□□□□ 0.63
CFAP54Q96N23 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms