Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AL121886.1-201ENST00000358609 435 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 U3.10-201ENST00000364459 214 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 RN7SKP6-201ENST00000364795 319 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AL390316.1-201ENST00000406279 553 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 RNU2-66P-201ENST00000410650 161 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 OR10T1P-201ENST00000424327 947 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 NMNAT1P2-201ENST00000435192 860 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 VDAC2P4-201ENST00000452925 711 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 PPIAP21-201ENST00000464473 501 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AP000893.1-201ENST00000474462 794 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC018797.3-201ENST00000513388 1241 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 FABP5P5-201ENST00000515537 406 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AP004247.1-201ENST00000531556 1289 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC136619.2-201ENST00000563361 631 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AP000403.1-201ENST00000603349 851 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 SEPT7P9-203ENST00000604116 343 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 TAS2R6P-201ENST00000605022 826 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AL159169.3-201ENST00000608871 561 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AL589743.7-201ENST00000612637 233 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC027807.2-201ENST00000616099 408 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 MESTIT1_2.1-201ENST00000616328 235 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC116165.2-201ENST00000616705 206 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 MIR6729-201ENST00000618194 65 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC132068.1-201ENST00000623805 459 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC005618.4-201ENST00000625053 554 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AL049767.1-202ENST00000637826 242 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 PANDAR-201ENST00000629595 1506 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC117529.2-201ENST00000512159 2068 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 OR4F13P-202ENST00000560066 2054 ntBASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
TRIM39Q9HCM9 AC006484.1-201ENST00000435086 1884 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 PHKBP1-201ENST00000450951 1951 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 RNA5SP326-201ENST00000363209 110 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 RNU5E-5P-201ENST00000365379 116 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 RPS3AP23-201ENST00000401762 784 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 RPS3AP9-201ENST00000417027 792 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 RPL7P30-201ENST00000420888 709 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AC234779.1-201ENST00000425910 285 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AC010975.2-201ENST00000427781 588 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AL390119.1-201ENST00000440329 312 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AC019185.1-201ENST00000442718 389 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 TRBV26-201ENST00000456572 344 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AC093899.1-201ENST00000457984 376 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 TPT1P7-201ENST00000458300 517 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 SNORD125-201ENST00000459538 96 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 RPL30P11-201ENST00000495304 339 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 RFPL4AP5-201ENST00000514977 504 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 CYCSP28-201ENST00000534284 321 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms