Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
LINC00643Q86TS7 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC2.21□□□□□ -2.06
LINC00643Q86TS7 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.21□□□□□ -2.06
LINC00643Q86TS7 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
LINC00643Q86TS7 MAPK6PS3-201ENST00000403865 2162 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 Z82195.2-201ENST00000612348 18351 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 OR5P1P-201ENST00000299512 925 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 TMSB4XP4-201ENST00000323496 618 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 RNA5SP183-201ENST00000362452 119 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 RNA5SP399-201ENST00000364003 117 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 RNA5SP189-201ENST00000364920 115 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 SNORA46-201ENST00000384762 135 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 RNA5SP424-201ENST00000390988 115 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 RPL21P75-201ENST00000396599 483 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 RPL21P28-201ENST00000401418 483 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AL592114.1-201ENST00000403842 483 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AL357075.1-201ENST00000404107 726 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 RPL31P52-201ENST00000407532 367 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 SNORD88.1-201ENST00000408684 91 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC245054.2-201ENST00000415639 319 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC013268.2-201ENST00000420753 337 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC019185.3-201ENST00000438805 323 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 HMGB3P11-201ENST00000440127 604 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC004890.1-201ENST00000461005 181 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 RPL21P39-201ENST00000463605 483 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC011979.1-201ENST00000472300 483 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 RPS27AP9-201ENST00000477681 438 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 RPL21P93-201ENST00000480465 489 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC233702.1-201ENST00000482905 502 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC087190.1-201ENST00000484462 480 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC093591.1-201ENST00000491435 481 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 RPL21P129-201ENST00000491732 478 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 RPL21P16-201ENST00000495531 483 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC078918.1-201ENST00000498515 228 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 HSPD1P15-201ENST00000505573 1122 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 RNU6-579P-201ENST00000516879 102 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 CYCSP29-201ENST00000533731 318 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AP001880.2-201ENST00000538233 448 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC026333.2-201ENST00000542164 106 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 TRAV15-201ENST00000556680 249 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC012146.2-201ENST00000576545 416 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 RN7SL66P-201ENST00000582099 264 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 METTL23-207ENST00000588783 1184 ntTSL 5 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC067852.4-201ENST00000590314 478 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 PSMA6P4-201ENST00000603247 718 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC018754.1-201ENST00000607486 925 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AL354760.1-201ENST00000608357 643 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AL391497.1-201ENST00000608671 547 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 AC136428.4-201ENST00000634254 1155 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 CYP4Z2P-201ENST00000423332 1512 ntBASIC2.2□□□□□ -2.06
LINC00643Q86TS7 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
LINC00643Q86TS7 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 AL583835.1-201ENST00000399570 407 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 U3.39-201ENST00000408569 239 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 RN7SKP53-201ENST00000411337 315 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 SAR1AP4-201ENST00000429225 591 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 LINC00869-202ENST00000430442 1065 ntTSL 5 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 RPS4XP4-201ENST00000443195 763 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC2.19□□□□□ -2.06
LINC00643Q86TS7 RPL38P1-201ENST00000460914 211 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 AC008571.1-201ENST00000467232 300 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 AC092324.1-201ENST00000468671 324 ntBASIC2.19□□□□□ -2.06
LINC00643Q86TS7 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms