Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 ZNF602P-201ENST00000405929 924 ntBASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 OR51A6P-201ENST00000418680 1004 ntBASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 YWHAEP5-201ENST00000431545 765 ntBASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 AC084198.1-201ENST00000477747 402 ntBASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 AC093663.1-201ENST00000497190 394 ntBASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 OR4A12P-201ENST00000530847 918 ntBASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 AC022882.1-201ENST00000532142 501 ntBASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 SCARNA15.3-201ENST00000626315 122 ntBASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 SCARNA4.1-201ENST00000628597 123 ntBASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 AC091862.1-201ENST00000438016 1100 ntBASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 AC025518.1-201ENST00000479856 347 ntBASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 RNA5SP154-201ENST00000516193 111 ntBASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 MYL12AP1-201ENST00000518490 515 ntBASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 AL139395.1-201ENST00000603662 160 ntBASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 AC006386.2-201ENST00000624491 75 ntBASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 AC012005.1-201ENST00000624575 75 ntBASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 IPO8P1-201ENST00000455509 3109 ntBASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 AC005326.1-201ENST00000429197 123 ntBASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 AC097713.2-201ENST00000430199 356 ntBASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 RPL21P11-201ENST00000461458 483 ntBASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 OR7E13P-201ENST00000526052 910 ntBASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 AC012603.1-201ENST00000606424 528 ntBASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 AL139089.1-201ENST00000620372 975 ntBASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 BDP1P-201ENST00000582658 1990 ntBASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC88AQ3V6T2 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 EIF4A1P11-201ENST00000451239 222 ntBASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 AC006960.3-201ENST00000561845 705 ntBASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 AC006077.1-201ENST00000604746 343 ntBASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 KPNA2P2-201ENST00000419546 1489 ntBASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 AC025750.2-201ENST00000442609 450 ntBASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 RPL21P13-201ENST00000488305 481 ntBASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 AC108941.1-201ENST00000502853 530 ntBASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 RNA5SP208-201ENST00000516156 78 ntBASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 Vault.1-201ENST00000516474 102 ntBASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC88AQ3V6T2 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 AC017007.4-201ENST00000503353 1352 ntBASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms