Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SGO1P1-201ENST00000603525 1447 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA1P49639 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
HOXA1P49639 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXA1P49639 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXA1P49639 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA1P49639 AC119744.1-201ENST00000454746 1715 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA1P49639 SNORA73.1-201ENST00000363107 205 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 RN7SKP44-201ENST00000363602 316 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 RNA5SP435-201ENST00000364044 108 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 RNU6-1279P-201ENST00000383917 103 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 MIR16-1-201ENST00000385271 89 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 SNORA17A-201ENST00000391185 133 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 AL590290.1-201ENST00000405336 380 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 AL356131.1-201ENST00000405826 414 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXA1P49639 VDAC1P9-201ENST00000412766 841 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 AMD1P2-201ENST00000412936 992 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 NRBF2P2-201ENST00000413087 861 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXA1P49639 SLC35E1P1-201ENST00000419313 864 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXA1P49639 AC093698.1-201ENST00000423843 571 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 RPS27P18-201ENST00000431701 247 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 RPL21P110-201ENST00000433345 446 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 MTND4P32-201ENST00000437189 1237 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA1P49639 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA1P49639 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA1P49639 HIGD1AP8-201ENST00000453927 274 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXA1P49639 RPL23AP71-201ENST00000470966 469 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 S100A11P1-201ENST00000477525 312 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 RN7SL441P-201ENST00000492388 296 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 RPS4XP20-201ENST00000505751 772 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA1P49639 HNRNPKP5-201ENST00000515300 253 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA1P49639 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA1P49639 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA1P49639 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA1P49639 AP006289.1-201ENST00000538089 277 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXA1P49639 AL442163.2-201ENST00000553912 710 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 NBEAP1-201ENST00000554452 979 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 DUXAP1-201ENST00000556632 463 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA1P49639 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA1P49639 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXA1P49639 AC115085.1-201ENST00000588924 229 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXA1P49639 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA1P49639 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA1P49639 AC027243.2-201ENST00000602530 724 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 AC126175.1-201ENST00000617041 758 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 AC018926.3-201ENST00000618841 406 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 AC022509.4-201ENST00000621404 572 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 SNORA17.5-201ENST00000630429 132 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA1P49639 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA1P49639 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA1P49639 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
HOXA1P49639 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA1P49639 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
HOXA1P49639 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
HOXA1P49639 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
HOXA1P49639 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
HOXA1P49639 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA1P49639 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA1P49639 AL513185.3-201ENST00000433335 1300 ntBASIC4.04□□□□□ -1.76
HOXA1P49639 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXA1P49639 AC109315.1-201ENST00000584143 1347 ntBASIC4.04□□□□□ -1.76
HOXA1P49639 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA1P49639 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA1P49639 AC011155.1-201ENST00000316512 456 ntBASIC4.04□□□□□ -1.76
HOXA1P49639 TMSB4XP4-201ENST00000323496 618 ntBASIC4.04□□□□□ -1.76
HOXA1P49639 AL031985.1-201ENST00000392713 418 ntBASIC4.04□□□□□ -1.76
HOXA1P49639 RNA5SP80-201ENST00000410475 111 ntBASIC4.04□□□□□ -1.76
HOXA1P49639 AL390774.1-201ENST00000411924 246 ntBASIC4.04□□□□□ -1.76
HOXA1P49639 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXA1P49639 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA1P49639 AC007435.1-201ENST00000421086 415 ntBASIC4.04□□□□□ -1.76
HOXA1P49639 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA1P49639 AL593851.1-201ENST00000426171 157 ntBASIC4.04□□□□□ -1.76
HOXA1P49639 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXA1P49639 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
HOXA1P49639 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA1P49639 ATP5F1P1-201ENST00000433775 569 ntBASIC4.04□□□□□ -1.76
HOXA1P49639 SEPT7P5-201ENST00000434048 306 ntBASIC4.04□□□□□ -1.76
HOXA1P49639 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXA1P49639 CYCSP12-201ENST00000437729 300 ntBASIC4.04□□□□□ -1.76
HOXA1P49639 PPIAP17-201ENST00000438507 471 ntBASIC4.04□□□□□ -1.76
HOXA1P49639 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXA1P49639 MTND3P1-201ENST00000441336 220 ntBASIC4.04□□□□□ -1.76
HOXA1P49639 MTND5P2-201ENST00000442927 1142 ntBASIC4.04□□□□□ -1.76
HOXA1P49639 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXA1P49639 RPL7AP61-201ENST00000443410 636 ntBASIC4.04□□□□□ -1.76
HOXA1P49639 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXA1P49639 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms