Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A1P12109 ASNSP1-201ENST00000518311 1939 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A1P12109 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A1P12109 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.8□□□□□ -1.48
COL6A1P12109 RNU6-1283P-201ENST00000365314 105 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
COL6A1P12109 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC5.8□□□□□ -1.48
COL6A1P12109 AP000357.1-201ENST00000409926 1165 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 AC009480.2-201ENST00000422916 432 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 RSL24D1P6-201ENST00000426934 401 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 DPPA2P1-201ENST00000428060 556 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 AC007559.1-201ENST00000428736 355 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 MTCO1P3-201ENST00000429327 192 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 LINC02210-201ENST00000444561 288 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 XACT-201ENST00000468762 497 ntTSL 5 BASIC5.8□□□□□ -1.48
COL6A1P12109 AC091959.2-201ENST00000477363 321 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 COX6B1P5-201ENST00000509843 249 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 AC008837.2-201ENST00000513076 418 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC5.8□□□□□ -1.48
COL6A1P12109 OR5AK3P-201ENST00000527486 1297 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC5.8□□□□□ -1.48
COL6A1P12109 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC5.8□□□□□ -1.48
COL6A1P12109 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC5.8□□□□□ -1.48
COL6A1P12109 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC5.8□□□□□ -1.48
COL6A1P12109 POLR2KP1-201ENST00000553226 168 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC5.8□□□□□ -1.48
COL6A1P12109 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
COL6A1P12109 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC5.8□□□□□ -1.48
COL6A1P12109 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.8□□□□□ -1.48
COL6A1P12109 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A1P12109 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC5.8□□□□□ -1.48
COL6A1P12109 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.8□□□□□ -1.48
COL6A1P12109 AC091135.1-201ENST00000585943 307 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC5.8□□□□□ -1.48
COL6A1P12109 AL606834.2-201ENST00000602954 668 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 AL355816.1-201ENST00000607951 118 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 AF250324.2-201ENST00000608299 610 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 AC008498.1-201ENST00000613012 531 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 uc_338.7-201ENST00000621834 124 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC5.8□□□□□ -1.48
COL6A1P12109 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A1P12109 AC239868.2-201ENST00000564237 4527 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 AL118496.1-201ENST00000440201 1812 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A1P12109 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC5.8□□□□□ -1.48
COL6A1P12109 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A1P12109 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.8□□□□□ -1.48
COL6A1P12109 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A1P12109 AC004158.1-201ENST00000564508 4319 ntBASIC5.8□□□□□ -1.48
COL6A1P12109 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.79□□□□□ -1.48
COL6A1P12109 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC5.79□□□□□ -1.48
COL6A1P12109 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.79□□□□□ -1.48
COL6A1P12109 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A1P12109 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A1P12109 AP002512.4-202ENST00000641599 4530 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A1P12109 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A1P12109 RNA5SP332-201ENST00000391063 115 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 MTND4LP20-201ENST00000402379 270 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 RNA5SP113-201ENST00000410486 84 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 RPL7P8-201ENST00000411964 730 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 AC004690.1-201ENST00000418216 328 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.79□□□□□ -1.48
COL6A1P12109 AC073069.1-201ENST00000428657 441 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 AL139415.2-201ENST00000431968 163 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5.79□□□□□ -1.48
COL6A1P12109 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC5.79□□□□□ -1.48
COL6A1P12109 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC5.79□□□□□ -1.48
COL6A1P12109 AC009263.1-201ENST00000441193 1239 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC5.79□□□□□ -1.48
COL6A1P12109 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC5.79□□□□□ -1.48
COL6A1P12109 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC5.79□□□□□ -1.48
COL6A1P12109 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC5.79□□□□□ -1.48
COL6A1P12109 AC079168.1-201ENST00000458741 345 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 AC006967.1-201ENST00000467608 589 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 AC104763.1-201ENST00000475274 360 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 BNIP3P41-201ENST00000503774 571 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 AC109464.2-201ENST00000510242 943 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 RNU6-405P-201ENST00000516637 110 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.79□□□□□ -1.48
COL6A1P12109 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC5.79□□□□□ -1.48
COL6A1P12109 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC5.79□□□□□ -1.48
COL6A1P12109 AHI1-217ENST00000534469 680 ntTSL 3 BASIC5.79□□□□□ -1.48
COL6A1P12109 AC016957.1-201ENST00000534895 309 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.79□□□□□ -1.48
COL6A1P12109 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC5.79□□□□□ -1.48
COL6A1P12109 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC5.79□□□□□ -1.48
COL6A1P12109 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC5.79□□□□□ -1.48
COL6A1P12109 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC5.79□□□□□ -1.48
COL6A1P12109 AC011260.1-201ENST00000578420 472 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.79□□□□□ -1.48
COL6A1P12109 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.79□□□□□ -1.48
COL6A1P12109 ABBA01006766.1-201ENST00000584728 294 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC5.79□□□□□ -1.48
COL6A1P12109 AC009237.13-201ENST00000603193 276 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 MTCYBP22-201ENST00000603788 447 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 AC080013.4-201ENST00000607624 649 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 AC126118.1-201ENST00000607744 628 ntBASIC5.79□□□□□ -1.48
COL6A1P12109 AP000238.1-201ENST00000608759 426 ntBASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms