Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC124068.1-201ENST00000563131 678 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC069061.3-201ENST00000582254 823 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 AP001542.2-201ENST00000593141 364 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC115621.1-201ENST00000604653 858 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC113194.1-201ENST00000606037 500 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC093673.2-201ENST00000609674 331 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 MIR6715B-201ENST00000637172 77 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS28Q9UK41 MAPK10-320ENST00000641462 6696 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 EOGT-210ENST00000615922 1931 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS28Q9UK41 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC138393.1-206ENST00000540997 1886 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 OR14L1P-202ENST00000641545 3009 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS28Q9UK41 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS28Q9UK41 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
VPS28Q9UK41 RNA5SP443-201ENST00000363083 132 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS28Q9UK41 DSTNP4-201ENST00000399472 474 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 RNU2-21P-201ENST00000410368 188 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 Y_RNA.625-201ENST00000411256 107 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 AL807761.1-201ENST00000417622 171 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 UQCRBP1-201ENST00000421129 336 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 YWHAZP8-201ENST00000436935 731 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 RAB11AP1-201ENST00000442978 646 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 H2AFZP6-201ENST00000444403 394 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 AC104651.2-201ENST00000447549 528 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 FCF1P6-201ENST00000456841 595 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 snoU13.7-201ENST00000459220 104 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 RPL21P71-201ENST00000465598 459 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 STMN1P2-201ENST00000508435 439 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 AC118282.2-201ENST00000508739 374 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 AC104417.1-201ENST00000523974 751 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
VPS28Q9UK41 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 CD69-203ENST00000536709 1020 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 ZNF971P-201ENST00000562068 1249 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 AC209154.1-201ENST00000582156 337 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 HMGB2P1-201ENST00000591146 634 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 AC068790.4-201ENST00000602474 263 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 AC008745.1-201ENST00000604064 271 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 AC018754.1-201ENST00000607486 925 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 AK6-205ENST00000618980 483 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 AL359757.1-201ENST00000623176 255 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 AL049536.1-201ENST00000625043 744 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 AC004808.1-201ENST00000627671 721 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 AC013437.2-201ENST00000639587 677 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.72□□□□□ -1.65
VPS28Q9UK41 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS28Q9UK41 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
VPS28Q9UK41 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.71□□□□□ -1.65
VPS28Q9UK41 SCN1A-220ENST00000641603 12506 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS28Q9UK41 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS28Q9UK41 AC021146.4-201ENST00000309229 279 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 UBE2Q2P1-202ENST00000354771 883 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 RNU1-94P-201ENST00000362627 173 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 MCTS2P-201ENST00000394552 546 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 MIR921-201ENST00000401133 56 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 LIPT1P1-201ENST00000415870 1186 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 AC234779.1-201ENST00000425910 285 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 CNOT7P1-201ENST00000429006 852 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS28Q9UK41 RPS27AP15-201ENST00000447672 466 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 RPS15AP1-201ENST00000457423 391 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 snoU13.1-201ENST00000459157 104 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms