Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC023128.2-201ENST00000420880 1223 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC115285.1-201ENST00000424879 736 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC005189.1-201ENST00000431286 310 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 RPS4XP4-201ENST00000443195 763 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 TPTE2P6-202ENST00000445572 1007 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 RPL38P1-201ENST00000460914 211 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC093267.1-201ENST00000489176 961 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC008628.1-201ENST00000508663 265 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 RNU7-143P-201ENST00000516781 65 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 IGKV2-36-201ENST00000519999 223 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AP003049.1-201ENST00000529418 457 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC007599.1-201ENST00000568688 1174 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 MTND4LP24-201ENST00000572277 291 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AL512506.1-201ENST00000613918 449 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 SNX18P1Y-201ENST00000616231 511 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 ZYXP1-201ENST00000617638 118 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AL669942.2-201ENST00000620352 697 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC008785.1-201ENST00000624475 456 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AP005264.7-201ENST00000625003 745 ntBASIC4.15□□□□□ -1.75
LHX3Q9UBR4 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
LHX3Q9UBR4 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 DDX18P3-201ENST00000404856 2007 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AC026951.1-201ENST00000559530 2459 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 RLIMP1-201ENST00000339626 1680 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 SPRR2C-201ENST00000290702 219 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 MIR372-201ENST00000362225 67 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 Y_RNA.110-201ENST00000363220 99 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 RNA5SP515-201ENST00000364570 118 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 RNU6-796P-201ENST00000391086 107 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 FABP12P1-201ENST00000401911 322 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 PGBD4P8-201ENST00000412993 562 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AL161747.1-201ENST00000480068 358 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AC006517.1-201ENST00000480485 328 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AC068587.1-201ENST00000483613 781 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AC133963.2-201ENST00000513686 578 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 HMGB1P19-201ENST00000517578 577 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 MTND1P6-201ENST00000523621 946 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AC068446.3-201ENST00000555285 382 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AC007224.1-201ENST00000564410 144 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 MIR4716-201ENST00000579628 84 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AC090312.1-201ENST00000580637 348 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AC067959.1-201ENST00000604334 379 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AC010857.1-201ENST00000606398 594 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 RNU4-89P-201ENST00000607443 133 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AC090246.1-201ENST00000616499 426 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AC097460.3-201ENST00000623099 442 ntBASIC4.14□□□□□ -1.75
LHX3Q9UBR4 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.14□□□□□ -1.75
LHX3Q9UBR4 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 RNU1-108P-201ENST00000362556 161 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 RNA5SP513-201ENST00000364648 118 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 RNU6-1005P-201ENST00000384519 107 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 VN1R42P-201ENST00000424651 344 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 ARL5AP2-201ENST00000444698 533 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 RPL5P32-201ENST00000454085 879 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 RPL37P3-201ENST00000456825 293 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 AP000942.1-201ENST00000463969 747 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 RN7SL585P-201ENST00000470538 280 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms