Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 RN7SKP283-201ENST00000517197 270 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 AC010306.1-201ENST00000523223 1117 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
NKX3-1Q99801 MTCO3P15-201ENST00000526563 574 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 LRRC6P1-201ENST00000532188 885 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
NKX3-1Q99801 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 DYNLL1P4-201ENST00000549314 266 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 CR383656.6-201ENST00000550518 394 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 MIR3667-201ENST00000581025 74 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 BNIP3P38-201ENST00000601117 544 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 AL020997.3-201ENST00000602843 359 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 AC013244.3-201ENST00000605614 388 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 AP001521.2-201ENST00000608772 546 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 AL353726.1-201ENST00000614041 1000 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 AC008147.4-201ENST00000617570 1204 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 AL158163.2-201ENST00000619110 700 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 AC092608.3-201ENST00000625017 386 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
NKX3-1Q99801 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
NKX3-1Q99801 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
NKX3-1Q99801 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.96□□□□□ -1.78
NKX3-1Q99801 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC006971.1-201ENST00000407916 4486 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
NKX3-1Q99801 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
NKX3-1Q99801 KPNA2P2-201ENST00000419546 1489 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 MTCO1P6-201ENST00000481192 1384 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC005261.4-201ENST00000600047 1385 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
NKX3-1Q99801 GNAS-202ENST00000306090 477 ntTSL 5 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 RNU1-87P-201ENST00000363727 170 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 RNU6-906P-201ENST00000384700 70 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 RNA5SP372-201ENST00000390836 115 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 MIR921-201ENST00000401133 56 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 RN7SKP216-201ENST00000411050 312 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC114755.2-201ENST00000413520 361 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 RPL6P29-201ENST00000414863 865 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC234782.4-201ENST00000417646 1048 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC002542.1-201ENST00000440683 193 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 TPMTP4-201ENST00000450749 678 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC092155.2-201ENST00000454675 477 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 NAP1L1P3-201ENST00000462291 880 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 RN7SL41P-201ENST00000476144 297 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 RPS3AP6-201ENST00000484430 795 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC007686.1-201ENST00000488511 463 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC108022.1-201ENST00000493466 478 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 OR7H2P-201ENST00000513483 306 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC008494.2-201ENST00000514544 370 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 RNU1-6P-201ENST00000516290 144 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 RN7SKP265-201ENST00000516448 223 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 COX6B1P6-201ENST00000522347 255 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 DEFB130C-202ENST00000530001 230 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 MIR4270-201ENST00000581799 70 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC015688.2-201ENST00000584523 262 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC091178.1-203ENST00000584586 279 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 HMGB2P1-201ENST00000591146 634 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC090181.2-201ENST00000602975 672 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 NTAN1P1-201ENST00000603150 646 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC104785.1-201ENST00000603220 588 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC123786.2-201ENST00000603459 275 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AL160290.3-201ENST00000604869 165 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms