Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 HMGB1P23-201ENST00000518743 568 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 OR5M7P-201ENST00000526140 972 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AC139103.1-201ENST00000534696 1030 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AC025918.2-201ENST00000558683 763 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 EIF1P6-201ENST00000600054 334 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AC004775.1-201ENST00000607389 753 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 U73479.1-201ENST00000618062 168 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 SEC63P2-201ENST00000503863 1939 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 NXPH1-205ENST00000602349 1953 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 FAM91A3P-201ENST00000456826 2544 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 RNU6-398P-201ENST00000384143 109 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 MIR141-201ENST00000384975 95 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 ENSAP1-201ENST00000392855 326 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 RAB28P1-201ENST00000411517 641 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 AC069218.2-201ENST00000411665 344 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 RPS23P10-201ENST00000416185 486 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 CDY14P-201ENST00000431260 1014 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 PRELID3BP10-201ENST00000431957 584 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 ELOCP18-201ENST00000434209 337 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 RPL21P112-201ENST00000434403 463 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 CDY12P-201ENST00000440679 1015 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 CDY13P-201ENST00000445813 1015 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 CDY23P-201ENST00000451661 1014 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 FABP3P2-201ENST00000453169 399 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 ANP32BP2-201ENST00000454525 545 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 RPS29P33-201ENST00000456717 146 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 AC079804.1-201ENST00000461922 436 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 RN7SL860P-201ENST00000473738 223 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 MRPS33P2-201ENST00000507850 322 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 AC008885.2-201ENST00000509506 930 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 RN7SKP276-201ENST00000516242 268 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 OR5D17P-201ENST00000531492 978 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 AC112230.1-201ENST00000604342 547 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 AC020634.1-201ENST00000608701 549 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 AC018926.3-201ENST00000618841 406 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 AC017104.5-201ENST00000637647 639 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 AC105074.1-201ENST00000623380 3095 ntBASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.13□□□□□ -1.75
ZNF540Q8NDQ6 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC135352.1-201ENST00000506173 1418 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AL442639.1-201ENST00000625030 1899 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 MTND5P28-201ENST00000438005 1594 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 U3.30-201ENST00000391308 210 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 OR51B3P-201ENST00000412287 913 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AL591848.1-201ENST00000413092 322 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC068287.1-201ENST00000430283 295 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC016831.4-201ENST00000438302 307 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AL513321.1-201ENST00000441175 761 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AL451050.1-201ENST00000450126 415 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC009220.1-201ENST00000451614 275 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 ISCUP1-201ENST00000454451 448 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC008565.1-201ENST00000509046 885 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 OR7H2P-201ENST00000513483 306 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 HNRNPKP5-201ENST00000515300 253 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 134.8 ms