Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
FOXF1Q12946 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
FOXF1Q12946 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
FOXF1Q12946 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.4□□□□□ -1.87
FOXF1Q12946 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
FOXF1Q12946 RN7SKP56-201ENST00000410513 331 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 SNORA57.3-201ENST00000411095 141 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
FOXF1Q12946 AL139247.1-201ENST00000422768 325 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 AC092017.2-201ENST00000427600 362 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 HIGD1AP12-201ENST00000427832 281 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC3.4□□□□□ -1.87
FOXF1Q12946 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 HMGB3P10-201ENST00000434734 572 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC3.4□□□□□ -1.87
FOXF1Q12946 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.4□□□□□ -1.87
FOXF1Q12946 OR52Y1P-201ENST00000452418 828 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 RPS20P21-201ENST00000466859 343 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 AC020898.1-201ENST00000474167 787 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 AGGF1P3-201ENST00000493675 1213 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 AC106872.2-201ENST00000494303 480 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 AC093311.1-201ENST00000506586 2021 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
FOXF1Q12946 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC3.4□□□□□ -1.87
FOXF1Q12946 MTND4LP31-201ENST00000514859 294 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 RNA5SP143-201ENST00000516936 115 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 SUMO2P20-201ENST00000520803 283 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.4□□□□□ -1.87
FOXF1Q12946 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.4□□□□□ -1.87
FOXF1Q12946 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.4□□□□□ -1.87
FOXF1Q12946 AL020997.2-201ENST00000602607 184 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 AL133247.2-201ENST00000603236 482 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 AL161912.3-201ENST00000605404 628 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 MIR486-1-201ENST00000612171 68 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 AL589935.2-201ENST00000616471 1231 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.4□□□□□ -1.87
FOXF1Q12946 OR5AC4P-202ENST00000642086 985 ntBASIC3.4□□□□□ -1.87
FOXF1Q12946 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
FOXF1Q12946 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
FOXF1Q12946 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
FOXF1Q12946 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
FOXF1Q12946 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.4□□□□□ -1.87
FOXF1Q12946 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
FOXF1Q12946 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
FOXF1Q12946 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
FOXF1Q12946 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.39□□□□□ -1.87
FOXF1Q12946 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.39□□□□□ -1.87
FOXF1Q12946 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
FOXF1Q12946 RNA5SP424-201ENST00000390988 115 ntBASIC3.39□□□□□ -1.87
FOXF1Q12946 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.39□□□□□ -1.87
FOXF1Q12946 CYCSP19-201ENST00000411715 316 ntBASIC3.39□□□□□ -1.87
FOXF1Q12946 RHEBP3-201ENST00000411920 351 ntBASIC3.39□□□□□ -1.87
FOXF1Q12946 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
FOXF1Q12946 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXF1Q12946 RPL17P36-201ENST00000420302 549 ntBASIC3.39□□□□□ -1.87
FOXF1Q12946 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC3.39□□□□□ -1.87
FOXF1Q12946 HMGB3P5-201ENST00000428894 612 ntBASIC3.39□□□□□ -1.87
FOXF1Q12946 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXF1Q12946 AL133162.1-201ENST00000463228 453 ntBASIC3.39□□□□□ -1.87
FOXF1Q12946 AC007991.1-201ENST00000522680 631 ntBASIC3.39□□□□□ -1.87
FOXF1Q12946 AC092851.1-201ENST00000535964 478 ntBASIC3.39□□□□□ -1.87
FOXF1Q12946 AC091515.1-201ENST00000548110 679 ntBASIC3.39□□□□□ -1.87
FOXF1Q12946 MTND2P17-201ENST00000550281 688 ntBASIC3.39□□□□□ -1.87
FOXF1Q12946 BNIP3P5-201ENST00000562290 498 ntBASIC3.39□□□□□ -1.87
FOXF1Q12946 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.39□□□□□ -1.87
FOXF1Q12946 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.39□□□□□ -1.87
FOXF1Q12946 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXF1Q12946 AL159169.2-201ENST00000610061 1269 ntBASIC3.39□□□□□ -1.87
FOXF1Q12946 AP003072.5-201ENST00000623872 773 ntBASIC3.39□□□□□ -1.87
FOXF1Q12946 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.39□□□□□ -1.87
FOXF1Q12946 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
FOXF1Q12946 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.39□□□□□ -1.87
FOXF1Q12946 PNPT1P2-201ENST00000456768 2050 ntBASIC3.39□□□□□ -1.87
FOXF1Q12946 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
FOXF1Q12946 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.38□□□□□ -1.87
FOXF1Q12946 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.38□□□□□ -1.87
FOXF1Q12946 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.38□□□□□ -1.87
FOXF1Q12946 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.38□□□□□ -1.87
FOXF1Q12946 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
FOXF1Q12946 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC3.38□□□□□ -1.87
FOXF1Q12946 RNU1-64P-201ENST00000365443 163 ntBASIC3.38□□□□□ -1.87
FOXF1Q12946 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.38□□□□□ -1.87
FOXF1Q12946 TCEA1P2-201ENST00000420496 906 ntBASIC3.38□□□□□ -1.87
FOXF1Q12946 AL445584.1-201ENST00000431451 330 ntBASIC3.38□□□□□ -1.87
FOXF1Q12946 AC006480.1-201ENST00000449887 378 ntBASIC3.38□□□□□ -1.87
FOXF1Q12946 NANOGP10-201ENST00000453325 895 ntBASIC3.38□□□□□ -1.87
FOXF1Q12946 UBDP1-202ENST00000457888 382 ntBASIC3.38□□□□□ -1.87
FOXF1Q12946 AC007688.1-201ENST00000475592 759 ntBASIC3.38□□□□□ -1.87
FOXF1Q12946 TRBV8-1-201ENST00000481590 279 ntBASIC3.38□□□□□ -1.87
FOXF1Q12946 PRELID3BP7-201ENST00000503606 469 ntBASIC3.38□□□□□ -1.87
FOXF1Q12946 BTF3L4P4-201ENST00000506381 449 ntBASIC3.38□□□□□ -1.87
FOXF1Q12946 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.38□□□□□ -1.87
FOXF1Q12946 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC3.38□□□□□ -1.87
FOXF1Q12946 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.38□□□□□ -1.87
FOXF1Q12946 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
FOXF1Q12946 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC3.38□□□□□ -1.87
FOXF1Q12946 OR7E13P-201ENST00000526052 910 ntBASIC3.38□□□□□ -1.87
FOXF1Q12946 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC3.38□□□□□ -1.87
FOXF1Q12946 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.38□□□□□ -1.87
FOXF1Q12946 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms