Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.84□□□□□ -1.63
HDAC4P56524 AC006518.2-201ENST00000542513 940 ntBASIC4.84□□□□□ -1.63
HDAC4P56524 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.84□□□□□ -1.63
HDAC4P56524 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC4.84□□□□□ -1.63
HDAC4P56524 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.84□□□□□ -1.63
HDAC4P56524 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.84□□□□□ -1.63
HDAC4P56524 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.84□□□□□ -1.63
HDAC4P56524 uc_338.18-201ENST00000615451 175 ntBASIC4.84□□□□□ -1.63
HDAC4P56524 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.84□□□□□ -1.63
HDAC4P56524 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.84□□□□□ -1.63
HDAC4P56524 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.64
HDAC4P56524 MAPK10-263ENST00000641052 4307 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HDAC4P56524 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
HDAC4P56524 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.83□□□□□ -1.64
HDAC4P56524 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HDAC4P56524 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.83□□□□□ -1.64
HDAC4P56524 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
HDAC4P56524 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HDAC4P56524 IL6STP1-201ENST00000346911 1020 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HDAC4P56524 RNA5SP146-201ENST00000410743 123 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 SSR1P2-201ENST00000415208 787 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 Z74021.1-201ENST00000423610 407 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 CDY14P-201ENST00000431260 1014 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.83□□□□□ -1.64
HDAC4P56524 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.83□□□□□ -1.64
HDAC4P56524 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.83□□□□□ -1.64
HDAC4P56524 CDY12P-201ENST00000440679 1015 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 AC002542.1-201ENST00000440683 193 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 AL592437.1-201ENST00000443781 492 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 CDY13P-201ENST00000445813 1015 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 MTND1P33-201ENST00000446251 917 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 AL935212.3-201ENST00000450729 284 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 CDY23P-201ENST00000451661 1014 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.83□□□□□ -1.64
HDAC4P56524 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC4.83□□□□□ -1.64
HDAC4P56524 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.83□□□□□ -1.64
HDAC4P56524 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.83□□□□□ -1.64
HDAC4P56524 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HDAC4P56524 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.83□□□□□ -1.64
HDAC4P56524 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC4.83□□□□□ -1.64
HDAC4P56524 RAB9BP1-201ENST00000519581 626 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 AC104417.1-201ENST00000523974 751 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.83□□□□□ -1.64
HDAC4P56524 LRRC6P1-201ENST00000532188 885 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 AC139103.1-201ENST00000534696 1030 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC4.83□□□□□ -1.64
HDAC4P56524 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.83□□□□□ -1.64
HDAC4P56524 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.83□□□□□ -1.64
HDAC4P56524 AC023824.3-201ENST00000569003 562 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.83□□□□□ -1.64
HDAC4P56524 COX6CP4-201ENST00000605798 228 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 AC100847.1-201ENST00000611316 481 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 AC009318.3-201ENST00000616916 503 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 RN7SL722P-201ENST00000617780 284 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 RN7SL565P-201ENST00000618246 284 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 MIR7641-1-201ENST00000627518 61 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 AC097655.1-201ENST00000635075 318 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
HDAC4P56524 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
HDAC4P56524 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.83□□□□□ -1.64
HDAC4P56524 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.83□□□□□ -1.64
HDAC4P56524 AC092435.4-201ENST00000623012 4159 ntBASIC4.83□□□□□ -1.64
HDAC4P56524 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.82□□□□□ -1.64
HDAC4P56524 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.82□□□□□ -1.64
HDAC4P56524 KARSP3-201ENST00000571212 1504 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HDAC4P56524 CYP1D1P-201ENST00000416662 1433 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
HDAC4P56524 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HDAC4P56524 UBE2Q2P1-202ENST00000354771 883 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
HDAC4P56524 CYB5AP4-201ENST00000396692 399 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 AL160275.2-201ENST00000412010 394 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 TRIM60P5Y-201ENST00000413946 574 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.82□□□□□ -1.64
HDAC4P56524 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.82□□□□□ -1.64
HDAC4P56524 COX6CP17-201ENST00000421389 185 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 RPL21P43-201ENST00000425440 472 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 AC092447.3-201ENST00000426027 686 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.82□□□□□ -1.64
HDAC4P56524 USP9YP9-201ENST00000429406 715 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.82□□□□□ -1.64
HDAC4P56524 TPT1P12-201ENST00000448968 492 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 RN7SL385P-201ENST00000468873 276 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 AC007537.2-201ENST00000472093 511 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 NDUFA5P9-201ENST00000472609 340 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
HDAC4P56524 AC134050.1-201ENST00000495088 933 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 AC098862.1-201ENST00000504991 413 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC4.82□□□□□ -1.64
HDAC4P56524 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.82□□□□□ -1.64
HDAC4P56524 AC008837.1-201ENST00000511513 412 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 AC021146.3-201ENST00000511911 260 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 AC119751.1-201ENST00000513357 765 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.82□□□□□ -1.64
HDAC4P56524 PRELID3BP4-201ENST00000515476 571 ntBASIC4.82□□□□□ -1.64
HDAC4P56524 IGKV1-32-201ENST00000519290 311 ntBASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms