Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.7□□□□□ -1.66
COL18A1P39060 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.7□□□□□ -1.66
COL18A1P39060 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.7□□□□□ -1.66
COL18A1P39060 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.7□□□□□ -1.66
COL18A1P39060 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.7□□□□□ -1.66
COL18A1P39060 IGHV3-32-201ENST00000519182 355 ntBASIC4.7□□□□□ -1.66
COL18A1P39060 MIR5680-201ENST00000577577 84 ntBASIC4.7□□□□□ -1.66
COL18A1P39060 OR7A8P-201ENST00000595427 913 ntBASIC4.7□□□□□ -1.66
COL18A1P39060 AL606834.2-201ENST00000602954 668 ntBASIC4.7□□□□□ -1.66
COL18A1P39060 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL18A1P39060 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
COL18A1P39060 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL18A1P39060 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
COL18A1P39060 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL18A1P39060 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.7□□□□□ -1.66
COL18A1P39060 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL18A1P39060 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC4.7□□□□□ -1.66
COL18A1P39060 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL18A1P39060 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.7□□□□□ -1.66
COL18A1P39060 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
COL18A1P39060 RNA5SP52-201ENST00000362448 134 ntBASIC4.7□□□□□ -1.66
COL18A1P39060 HLFP1-201ENST00000402375 499 ntBASIC4.7□□□□□ -1.66
COL18A1P39060 RPF2P1-201ENST00000424137 906 ntBASIC4.7□□□□□ -1.66
COL18A1P39060 OR5AW1P-201ENST00000426334 1006 ntBASIC4.7□□□□□ -1.66
COL18A1P39060 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.7□□□□□ -1.66
COL18A1P39060 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC4.7□□□□□ -1.66
COL18A1P39060 AP006245.1-201ENST00000522549 120 ntBASIC4.7□□□□□ -1.66
COL18A1P39060 AP005205.1-201ENST00000563503 508 ntBASIC4.7□□□□□ -1.66
COL18A1P39060 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.7□□□□□ -1.66
COL18A1P39060 AC010680.3-201ENST00000604215 520 ntBASIC4.7□□□□□ -1.66
COL18A1P39060 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC4.7□□□□□ -1.66
COL18A1P39060 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.7□□□□□ -1.66
COL18A1P39060 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL18A1P39060 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL18A1P39060 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
COL18A1P39060 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL18A1P39060 AL121839.2-201ENST00000565058 6943 ntBASIC4.69□□□□□ -1.66
COL18A1P39060 AC011266.1-201ENST00000624119 3569 ntBASIC4.69□□□□□ -1.66
COL18A1P39060 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL18A1P39060 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC4.69□□□□□ -1.66
COL18A1P39060 HIGD1AP12-201ENST00000427832 281 ntBASIC4.69□□□□□ -1.66
COL18A1P39060 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.69□□□□□ -1.66
COL18A1P39060 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.69□□□□□ -1.66
COL18A1P39060 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.69□□□□□ -1.66
COL18A1P39060 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.69□□□□□ -1.66
COL18A1P39060 AC067852.3-201ENST00000589177 561 ntBASIC4.69□□□□□ -1.66
COL18A1P39060 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.69□□□□□ -1.66
COL18A1P39060 OR6C71P-202ENST00000641886 1107 ntBASIC4.69□□□□□ -1.66
COL18A1P39060 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL18A1P39060 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL18A1P39060 SAGE2P-201ENST00000420011 2126 ntBASIC4.69□□□□□ -1.66
COL18A1P39060 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
COL18A1P39060 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL18A1P39060 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL18A1P39060 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL18A1P39060 RPL7P44-201ENST00000424827 742 ntBASIC4.68□□□□□ -1.66
COL18A1P39060 RPS3AP14-201ENST00000483907 780 ntBASIC4.68□□□□□ -1.66
COL18A1P39060 RPL7P23-201ENST00000493874 747 ntBASIC4.68□□□□□ -1.66
COL18A1P39060 PTGES3P3-201ENST00000511479 482 ntBASIC4.68□□□□□ -1.66
COL18A1P39060 RNU6-579P-201ENST00000516879 102 ntBASIC4.68□□□□□ -1.66
COL18A1P39060 EIF4BP1-201ENST00000554881 351 ntBASIC4.68□□□□□ -1.66
COL18A1P39060 AC091905.1-201ENST00000624400 311 ntBASIC4.68□□□□□ -1.66
COL18A1P39060 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL18A1P39060 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
COL18A1P39060 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.68□□□□□ -1.66
COL18A1P39060 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL18A1P39060 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL18A1P39060 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
COL18A1P39060 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4.68□□□□□ -1.66
COL18A1P39060 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.68□□□□□ -1.66
COL18A1P39060 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.68□□□□□ -1.66
COL18A1P39060 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.68□□□□□ -1.66
COL18A1P39060 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL18A1P39060 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL18A1P39060 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.68□□□□□ -1.66
COL18A1P39060 FTH1P9-201ENST00000513251 355 ntBASIC4.68□□□□□ -1.66
COL18A1P39060 IGKV2-26-201ENST00000518305 343 ntBASIC4.68□□□□□ -1.66
COL18A1P39060 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.68□□□□□ -1.66
COL18A1P39060 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.68□□□□□ -1.66
COL18A1P39060 MIR4276-201ENST00000584832 70 ntBASIC4.68□□□□□ -1.66
COL18A1P39060 AC016590.3-201ENST00000611171 753 ntBASIC4.68□□□□□ -1.66
COL18A1P39060 AL732618.1-201ENST00000623251 301 ntBASIC4.68□□□□□ -1.66
COL18A1P39060 AL353743.1-202ENST00000431724 1695 ntBASIC4.67□□□□□ -1.66
COL18A1P39060 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.67□□□□□ -1.66
COL18A1P39060 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.67□□□□□ -1.66
COL18A1P39060 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL18A1P39060 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
COL18A1P39060 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL18A1P39060 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL18A1P39060 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL18A1P39060 RNA5SP42-201ENST00000364278 115 ntBASIC4.67□□□□□ -1.66
COL18A1P39060 MTHFD2P2-201ENST00000407725 247 ntBASIC4.67□□□□□ -1.66
COL18A1P39060 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.67□□□□□ -1.66
COL18A1P39060 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.67□□□□□ -1.66
COL18A1P39060 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.67□□□□□ -1.66
COL18A1P39060 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC4.67□□□□□ -1.66
COL18A1P39060 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.67□□□□□ -1.66
COL18A1P39060 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.67□□□□□ -1.66
COL18A1P39060 UBE2NP1-201ENST00000545592 458 ntBASIC4.67□□□□□ -1.66
COL18A1P39060 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms