Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
BRCA1P38398 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
BRCA1P38398 RNU1-15P-201ENST00000353977 144 ntBASIC4.5□□□□□ -1.69
BRCA1P38398 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
BRCA1P38398 AL645931.1-201ENST00000439737 410 ntBASIC4.5□□□□□ -1.69
BRCA1P38398 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.5□□□□□ -1.69
BRCA1P38398 AC080014.1-201ENST00000496877 1201 ntBASIC4.5□□□□□ -1.69
BRCA1P38398 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
BRCA1P38398 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.5□□□□□ -1.69
BRCA1P38398 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC4.5□□□□□ -1.69
BRCA1P38398 AC010653.1-201ENST00000571108 881 ntBASIC4.5□□□□□ -1.69
BRCA1P38398 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
BRCA1P38398 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.5□□□□□ -1.69
BRCA1P38398 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
BRCA1P38398 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
BRCA1P38398 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
BRCA1P38398 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
BRCA1P38398 PROS2P-201ENST00000474651 1951 ntBASIC4.5□□□□□ -1.69
BRCA1P38398 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.49□□□□□ -1.69
BRCA1P38398 BMS1P3-201ENST00000372011 932 ntBASIC4.49□□□□□ -1.69
BRCA1P38398 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
BRCA1P38398 MIR195-201ENST00000385194 87 ntBASIC4.49□□□□□ -1.69
BRCA1P38398 AL603766.1-201ENST00000407763 664 ntBASIC4.49□□□□□ -1.69
BRCA1P38398 AC004448.2-201ENST00000422360 586 ntBASIC4.49□□□□□ -1.69
BRCA1P38398 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.49□□□□□ -1.69
BRCA1P38398 AC025750.2-201ENST00000442609 450 ntBASIC4.49□□□□□ -1.69
BRCA1P38398 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
BRCA1P38398 FTH1P11-201ENST00000517577 551 ntBASIC4.49□□□□□ -1.69
BRCA1P38398 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.49□□□□□ -1.69
BRCA1P38398 MIR5680-201ENST00000577577 84 ntBASIC4.49□□□□□ -1.69
BRCA1P38398 AL139089.1-201ENST00000620372 975 ntBASIC4.49□□□□□ -1.69
BRCA1P38398 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
BRCA1P38398 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
BRCA1P38398 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
BRCA1P38398 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
BRCA1P38398 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
BRCA1P38398 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC4.49□□□□□ -1.69
BRCA1P38398 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
BRCA1P38398 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
BRCA1P38398 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
BRCA1P38398 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
BRCA1P38398 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
BRCA1P38398 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
BRCA1P38398 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.49□□□□□ -1.69
BRCA1P38398 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.49□□□□□ -1.69
BRCA1P38398 AL138787.1-202ENST00000437804 898 ntBASIC4.49□□□□□ -1.69
BRCA1P38398 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.49□□□□□ -1.69
BRCA1P38398 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.49□□□□□ -1.69
BRCA1P38398 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.49□□□□□ -1.69
BRCA1P38398 AC034105.3-201ENST00000565294 442 ntBASIC4.49□□□□□ -1.69
BRCA1P38398 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
BRCA1P38398 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.49□□□□□ -1.69
BRCA1P38398 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.49□□□□□ -1.69
BRCA1P38398 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
BRCA1P38398 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
BRCA1P38398 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
BRCA1P38398 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
BRCA1P38398 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
BRCA1P38398 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
BRCA1P38398 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.48□□□□□ -1.69
BRCA1P38398 RNF19BPX-201ENST00000426224 625 ntBASIC4.48□□□□□ -1.69
BRCA1P38398 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.48□□□□□ -1.69
BRCA1P38398 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.48□□□□□ -1.69
BRCA1P38398 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.48□□□□□ -1.69
BRCA1P38398 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.48□□□□□ -1.69
BRCA1P38398 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.48□□□□□ -1.69
BRCA1P38398 PTGES3P3-201ENST00000511479 482 ntBASIC4.48□□□□□ -1.69
BRCA1P38398 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.48□□□□□ -1.69
BRCA1P38398 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC4.48□□□□□ -1.69
BRCA1P38398 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.48□□□□□ -1.69
BRCA1P38398 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC4.48□□□□□ -1.69
BRCA1P38398 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC4.48□□□□□ -1.69
BRCA1P38398 AC107294.1-201ENST00000609524 467 ntBASIC4.48□□□□□ -1.69
BRCA1P38398 AC026422.1-201ENST00000623961 452 ntBASIC4.48□□□□□ -1.69
BRCA1P38398 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
BRCA1P38398 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
BRCA1P38398 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
BRCA1P38398 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
BRCA1P38398 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.48□□□□□ -1.69
BRCA1P38398 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.48□□□□□ -1.69
BRCA1P38398 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC4.47□□□□□ -1.69
BRCA1P38398 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
BRCA1P38398 AC013268.2-201ENST00000420753 337 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 RPF2P1-201ENST00000424137 906 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 S100A11P2-201ENST00000467589 312 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 RN7SL429P-201ENST00000479090 223 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 RN7SL489P-201ENST00000486185 223 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 RN7SL327P-201ENST00000488659 223 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 AC021146.3-201ENST00000511911 260 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 TRAV15-201ENST00000556680 249 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.47□□□□□ -1.69
BRCA1P38398 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
BRCA1P38398 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
BRCA1P38398 SNORD91B-202ENST00000608459 222 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
BRCA1P38398 RN7SL853P-201ENST00000617250 223 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 AC112198.2-201ENST00000426589 6996 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC4.47□□□□□ -1.69
BRCA1P38398 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
BRCA1P38398 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms