Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 MIR8059-201ENST00000620427 81 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 OR52H1-202ENST00000641796 1061 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS35Q96QK1 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS35Q96QK1 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS35Q96QK1 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS35Q96QK1 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS35Q96QK1 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 RPL32P3-201ENST00000359025 275 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 AC068538.1-201ENST00000376856 336 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 RN7SKP182-201ENST00000410772 298 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 LINC01347-201ENST00000417964 355 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 ARL2BPP3-201ENST00000421226 480 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 AC234779.1-201ENST00000425910 285 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 DYNLL1P7-201ENST00000429273 258 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 RPL23AP46-201ENST00000438548 490 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 MTCO3P43-201ENST00000440974 771 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 MTND2P6-201ENST00000455337 1030 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 RNA5SP246-201ENST00000458909 119 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 AC010618.1-201ENST00000469924 477 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 AC105137.1-201ENST00000484355 562 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 AC104687.1-201ENST00000485829 412 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 AC111193.1-201ENST00000504097 155 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VPS35Q96QK1 RFPL1S-203ENST00000539579 330 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 MIR3939-201ENST00000582614 106 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 VN1R84P-201ENST00000593697 235 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 AC135178.6-201ENST00000605314 398 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 AC017076.1-201ENST00000607613 578 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 CR392039.4-201ENST00000624968 501 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 MIR6830-201ENST00000636015 70 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 AL353743.4-201ENST00000422653 1547 ntBASIC4.19□□□□□ -1.74
VPS35Q96QK1 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
VPS35Q96QK1 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS35Q96QK1 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS35Q96QK1 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 LARP1BP1-201ENST00000506036 1359 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC005261.4-201ENST00000600047 1385 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 LINC02471-203ENST00000641941 4752 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS35Q96QK1 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS35Q96QK1 MIR513A2-201ENST00000385249 127 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 HMGB1P10-201ENST00000395823 563 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 XKRYP4-201ENST00000414395 483 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 RPL23AP38-201ENST00000423801 469 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 FAR1P1-201ENST00000427163 934 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 COX6B1P7-201ENST00000430845 235 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS35Q96QK1 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS35Q96QK1 AL513321.1-201ENST00000441175 761 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 BTBD7P2-201ENST00000441962 620 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC006326.1-201ENST00000445465 787 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 NUTF2P3-201ENST00000448540 384 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 XKRYP5-201ENST00000449659 483 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC079804.1-201ENST00000461922 436 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 RPS29P19-201ENST00000479709 171 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC011037.1-201ENST00000483964 558 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 RPS27AP13-201ENST00000498403 237 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC010285.3-201ENST00000511668 676 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 HNRNPKP5-201ENST00000515300 253 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC103833.1-201ENST00000517442 172 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC105233.3-201ENST00000531125 744 ntBASIC4.18□□□□□ -1.74
VPS35Q96QK1 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS35Q96QK1 AC135001.1-201ENST00000544546 283 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms