Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC5.03□□□□□ -1.61
CCDC140Q96MF4 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.61
CCDC140Q96MF4 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 RN7SKP184-201ENST00000362348 333 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 RNU1-84P-201ENST00000365447 164 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 SNORD94-201ENST00000386037 137 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 Z97832.1-201ENST00000402490 328 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 RN7SKP247-201ENST00000411094 308 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 SNRPFP1-201ENST00000414761 252 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 RWDD4P2-201ENST00000426392 563 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC083862.1-201ENST00000427378 1242 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC008065.1-201ENST00000428525 348 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC092162.1-201ENST00000432828 434 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 RPS20P1-201ENST00000434853 354 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 GAPDHP37-201ENST00000442317 968 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC023274.2-201ENST00000445264 521 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 SLC25A51P1-201ENST00000468432 871 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AP003385.3-201ENST00000472498 287 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC091965.3-201ENST00000506236 208 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC106872.4-201ENST00000510050 523 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 TMEM248P1-201ENST00000510579 951 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 CDV3-208ENST00000511392 554 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 FTH1P21-201ENST00000512179 511 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC022790.1-201ENST00000522872 204 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC024267.2-201ENST00000582737 417 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 MIR4795-201ENST00000584182 89 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AP001029.3-201ENST00000588063 596 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC006329.2-201ENST00000611491 394 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 MIR6503-201ENST00000622884 86 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC011455.2-201ENST00000599320 3336 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 AC006020.1-201ENST00000420179 1854 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 MFSD8-239ENST00000641590 2479 ntBASIC5.02□□□□□ -1.61
CCDC140Q96MF4 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC140Q96MF4 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 RPS4XP5-202ENST00000449995 1334 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms