Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 MFSD13B-201ENST00000420133 1290 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AL390023.1-201ENST00000428836 262 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AL590103.1-201ENST00000434488 307 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 NDUFB1P1-201ENST00000435191 180 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 ACTR3P2-201ENST00000439585 1257 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC073648.4-201ENST00000442655 781 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC092647.3-201ENST00000443044 633 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 OR6K1P-201ENST00000456766 971 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 OR9M1P-201ENST00000459641 921 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AL161747.1-201ENST00000480068 358 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AF213884.1-201ENST00000488102 463 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 RN7SL547P-201ENST00000490793 290 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC098799.2-201ENST00000509466 868 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC107934.2-201ENST00000518653 310 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC239860.2-201ENST00000525886 270 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC105233.3-201ENST00000531125 744 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AL049779.2-201ENST00000553847 315 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 SETP2-201ENST00000553886 926 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AL627309.6-201ENST00000606857 840 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 EIF3FP1-201ENST00000613970 806 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AL445363.3-201ENST00000623080 671 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 AC008033.1-201ENST00000216407 1162 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 RNU1-14P-201ENST00000362759 152 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 SSXP9-201ENST00000417503 292 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 AL138479.1-201ENST00000426913 484 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 RPL7L1P9-201ENST00000431298 745 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 HMGN2P20-201ENST00000437531 273 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 RSL24D1P2-201ENST00000445584 366 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 UQCRHP3-201ENST00000451503 251 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 TREML3P-201ENST00000457327 501 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 OR5H3P-201ENST00000502817 919 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 IQCH-203ENST00000512104 1000 ntTSL 2 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 RPL7L1P4-201ENST00000513004 707 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 APOOP4-201ENST00000513530 597 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 RNU6-347P-201ENST00000516658 105 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 SEC11B-201ENST00000518383 499 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 AC025430.1-201ENST00000561324 498 ntTSL 3 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 MIR4474-201ENST00000579189 78 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 AC005479.3-201ENST00000602790 431 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 AC073091.2-201ENST00000603205 907 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 AC012511.1-201ENST00000608140 449 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 AC093799.2-201ENST00000610062 578 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 Mico1.1-201ENST00000611698 204 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 AL359198.2-201ENST00000611836 194 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 FAM27D1-201ENST00000612308 341 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 LINC01739-205ENST00000641890 573 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.23□□□□□ -2.05
LINC00643Q86TS7 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
LINC00643Q86TS7 AC017002.4-201ENST00000604721 1525 ntBASIC2.22□□□□□ -2.05
LINC00643Q86TS7 SLC9B1P1-201ENST00000331172 1337 ntBASIC2.22□□□□□ -2.05
LINC00643Q86TS7 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.22□□□□□ -2.05
LINC00643Q86TS7 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.22□□□□□ -2.05
LINC00643Q86TS7 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC2.22□□□□□ -2.05
LINC00643Q86TS7 AL137100.1-201ENST00000556703 1620 ntBASIC2.22□□□□□ -2.05
LINC00643Q86TS7 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
LINC00643Q86TS7 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms