Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
FOXA3P55318 AL133383.2-201ENST00000622958 2336 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA3P55318 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA3P55318 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA3P55318 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA3P55318 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC2.87□□□□□ -1.95
FOXA3P55318 RPS26P8-201ENST00000393490 348 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 SPTLC1P2-201ENST00000407089 121 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 MIR1178-201ENST00000408396 91 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 SNORA11.3-201ENST00000408471 128 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 RNU4-25P-201ENST00000410569 230 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 AC069218.2-201ENST00000411665 344 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA3P55318 AL691447.1-201ENST00000419456 387 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 RPL30P3-201ENST00000424262 333 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA3P55318 AC006989.1-201ENST00000427212 131 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 HIGD1AP12-201ENST00000427832 281 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 AL138799.3-201ENST00000438968 350 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA3P55318 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC2.87□□□□□ -1.95
FOXA3P55318 FCF1P7-201ENST00000451185 558 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 RPL7P61-201ENST00000451721 751 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 AC069277.2-201ENST00000454211 432 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 AC083982.1-201ENST00000485679 344 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 AC108941.1-201ENST00000502853 530 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA3P55318 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC2.87□□□□□ -1.95
FOXA3P55318 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA3P55318 AC022790.1-201ENST00000522872 204 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 PDCL2P2-201ENST00000533651 189 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 CYCSP29-201ENST00000533731 318 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 AL049829.2-201ENST00000554010 285 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA3P55318 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA3P55318 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA3P55318 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA3P55318 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
FOXA3P55318 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA3P55318 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA3P55318 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA3P55318 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA3P55318 SNORA11.6-201ENST00000619030 128 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 AC002044.3-201ENST00000623314 541 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA3P55318 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA3P55318 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC2.87□□□□□ -1.95
FOXA3P55318 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA3P55318 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA3P55318 AF127577.6-201ENST00000623352 2191 ntBASIC2.87□□□□□ -1.95
FOXA3P55318 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA3P55318 CR788268.1-201ENST00000603931 1809 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 PWAR6-201ENST00000552334 4618 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA3P55318 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC2.86□□□□□ -1.95
FOXA3P55318 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA3P55318 AC131971.1-201ENST00000332881 1482 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 RNA5SP443-201ENST00000363083 132 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 RNA5SP399-201ENST00000364003 117 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 RNU6-283P-201ENST00000364788 107 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA3P55318 MIR199A2-201ENST00000385289 110 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC2.86□□□□□ -1.95
FOXA3P55318 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC2.86□□□□□ -1.95
FOXA3P55318 AC007390.1-201ENST00000415722 356 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA3P55318 FAR2P4-202ENST00000425399 584 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 COX6B1P7-201ENST00000430845 235 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC2.86□□□□□ -1.95
FOXA3P55318 AL627308.1-201ENST00000435693 821 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA3P55318 RANP8-201ENST00000444720 713 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 RPL7P48-201ENST00000461513 746 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 AC005912.1-201ENST00000495392 255 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 AC105233.1-201ENST00000498840 781 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 THAP6-203ENST00000502620 582 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA3P55318 NDUFB5P1-201ENST00000508134 564 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA3P55318 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC2.86□□□□□ -1.95
FOXA3P55318 ATG10-208ENST00000513634 618 ntTSL 2 BASIC2.86□□□□□ -1.95
FOXA3P55318 MTCO1P30-201ENST00000515244 580 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC2.86□□□□□ -1.95
FOXA3P55318 AP001922.4-201ENST00000526967 290 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 HIGD1AP10-201ENST00000527837 282 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA3P55318 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC2.86□□□□□ -1.95
FOXA3P55318 AC025423.2-201ENST00000537570 439 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA3P55318 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC2.86□□□□□ -1.95
FOXA3P55318 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC2.86□□□□□ -1.95
FOXA3P55318 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA3P55318 KLKP1-201ENST00000595979 403 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 RPL12P25-202ENST00000598100 674 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 AC090948.1-201ENST00000607464 549 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 AC092653.1-201ENST00000608509 531 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 XIST_intron.1-201ENST00000619444 68 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC2.86□□□□□ -1.95
FOXA3P55318 AL139254.3-201ENST00000641097 674 ntBASIC2.86□□□□□ -1.95
FOXA3P55318 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
FOXA3P55318 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms