Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL606490.9-201ENST00000603331 271 ntBASIC3.58□□□□□ -1.84
FOXA1P55317 AL590392.1-201ENST00000604960 446 ntBASIC3.58□□□□□ -1.84
FOXA1P55317 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA1P55317 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.58□□□□□ -1.84
FOXA1P55317 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.58□□□□□ -1.84
FOXA1P55317 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA1P55317 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.58□□□□□ -1.84
FOXA1P55317 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
FOXA1P55317 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.58□□□□□ -1.84
FOXA1P55317 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA1P55317 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA1P55317 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
FOXA1P55317 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA1P55317 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA1P55317 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA1P55317 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA1P55317 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.58□□□□□ -1.84
FOXA1P55317 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC3.57□□□□□ -1.84
FOXA1P55317 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.57□□□□□ -1.84
FOXA1P55317 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA1P55317 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA1P55317 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA1P55317 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA1P55317 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.57□□□□□ -1.84
FOXA1P55317 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
FOXA1P55317 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC3.57□□□□□ -1.84
FOXA1P55317 SNORA11-201ENST00000408789 128 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 RHEBP3-201ENST00000411920 351 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.57□□□□□ -1.84
FOXA1P55317 RSL24D1P6-201ENST00000426934 401 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 AL365396.1-201ENST00000430854 671 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.57□□□□□ -1.84
FOXA1P55317 AC074367.1-201ENST00000438685 1125 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.57□□□□□ -1.84
FOXA1P55317 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA1P55317 SNRPFP2-201ENST00000440710 251 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC3.57□□□□□ -1.84
FOXA1P55317 AC114755.5-201ENST00000447760 831 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 AC022034.3-201ENST00000471393 478 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 AC098583.1-201ENST00000480875 255 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 AC093311.1-201ENST00000506586 2021 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.57□□□□□ -1.84
FOXA1P55317 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC3.57□□□□□ -1.84
FOXA1P55317 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.57□□□□□ -1.84
FOXA1P55317 AC023161.2-201ENST00000551218 780 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.57□□□□□ -1.84
FOXA1P55317 TRAV15-201ENST00000556680 249 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 AP005901.4-201ENST00000577336 569 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.57□□□□□ -1.84
FOXA1P55317 AC123912.3-201ENST00000600907 1367 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.57□□□□□ -1.84
FOXA1P55317 AL713998.2-201ENST00000604538 1198 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 AL163642.2-201ENST00000604722 1019 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 AC096586.2-201ENST00000610260 441 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.57□□□□□ -1.84
FOXA1P55317 AC015908.5-201ENST00000623289 343 ntBASIC3.57□□□□□ -1.84
FOXA1P55317 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
FOXA1P55317 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA1P55317 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA1P55317 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA1P55317 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
FOXA1P55317 AC024560.2-201ENST00000507981 1497 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
FOXA1P55317 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
FOXA1P55317 MFSD8-236ENST00000641509 4050 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC3.56□□□□□ -1.84
FOXA1P55317 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
FOXA1P55317 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
FOXA1P55317 RNA5SP42-201ENST00000364278 115 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 RPL7P60-201ENST00000397636 735 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 ZNF602P-201ENST00000405929 924 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 Z98941.1-201ENST00000407764 100 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 MTND4LP21-201ENST00000415303 295 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 AL139247.1-201ENST00000422768 325 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 AL390879.2-203ENST00000426943 1121 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 OR4F13P-201ENST00000428478 931 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXA1P55317 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXA1P55317 TRIM60P9Y-201ENST00000438459 816 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 RPL21P89-201ENST00000444021 467 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 TRIM60P11Y-201ENST00000445313 801 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 RPL10P17-201ENST00000453852 316 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 AC099563.1-201ENST00000456086 418 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
FOXA1P55317 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC3.56□□□□□ -1.84
FOXA1P55317 MTHFD2P4-201ENST00000515074 1025 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 RNA5SP164-201ENST00000516533 110 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.56□□□□□ -1.84
FOXA1P55317 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXA1P55317 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXA1P55317 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
FOXA1P55317 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.56□□□□□ -1.84
FOXA1P55317 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.56□□□□□ -1.84
FOXA1P55317 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.56□□□□□ -1.84
FOXA1P55317 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXA1P55317 AC023043.4-201ENST00000612081 449 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXA1P55317 AC006338.2-201ENST00000616864 791 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.56□□□□□ -1.84
FOXA1P55317 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms