Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
SOX3P41225 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX3P41225 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX3P41225 AC087190.4-201ENST00000574616 8334 ntBASIC4.1□□□□□ -1.75
SOX3P41225 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX3P41225 AC008033.1-201ENST00000216407 1162 ntBASIC4.1□□□□□ -1.75
SOX3P41225 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SOX3P41225 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
SOX3P41225 ENSAP3-201ENST00000312710 333 ntBASIC4.1□□□□□ -1.75
SOX3P41225 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
SOX3P41225 MIR513A2-201ENST00000385249 127 ntBASIC4.1□□□□□ -1.75
SOX3P41225 SNORD65C-201ENST00000390962 71 ntBASIC4.1□□□□□ -1.75
SOX3P41225 RAB28P1-201ENST00000411517 641 ntBASIC4.1□□□□□ -1.75
SOX3P41225 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX3P41225 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX3P41225 CHIAP3-201ENST00000423668 1133 ntBASIC4.1□□□□□ -1.75
SOX3P41225 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.1□□□□□ -1.75
SOX3P41225 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX3P41225 AC004854.1-201ENST00000440356 349 ntBASIC4.1□□□□□ -1.75
SOX3P41225 GEMIN8P3-201ENST00000445417 720 ntBASIC4.1□□□□□ -1.75
SOX3P41225 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX3P41225 RPL7L1P1-201ENST00000448259 785 ntBASIC4.1□□□□□ -1.75
SOX3P41225 TPT1P12-201ENST00000448968 492 ntBASIC4.1□□□□□ -1.75
SOX3P41225 NPM1P39-201ENST00000449818 867 ntBASIC4.1□□□□□ -1.75
SOX3P41225 AC053481.1-201ENST00000467217 306 ntBASIC4.1□□□□□ -1.75
SOX3P41225 RPS4XP6-201ENST00000477670 797 ntBASIC4.1□□□□□ -1.75
SOX3P41225 AC104687.1-201ENST00000485829 412 ntBASIC4.1□□□□□ -1.75
SOX3P41225 RN7SL810P-201ENST00000493031 276 ntBASIC4.1□□□□□ -1.75
SOX3P41225 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX3P41225 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX3P41225 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX3P41225 AC110760.3-202ENST00000515177 371 ntBASIC4.1□□□□□ -1.75
SOX3P41225 MYL12AP1-201ENST00000518490 515 ntBASIC4.1□□□□□ -1.75
SOX3P41225 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX3P41225 AC083923.1-201ENST00000523708 376 ntBASIC4.1□□□□□ -1.75
SOX3P41225 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SOX3P41225 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX3P41225 AC069240.1-201ENST00000548774 375 ntBASIC4.1□□□□□ -1.75
SOX3P41225 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.1□□□□□ -1.75
SOX3P41225 SULT1C2P2-201ENST00000562517 294 ntBASIC4.1□□□□□ -1.75
SOX3P41225 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX3P41225 ATP5F1P7-201ENST00000567330 760 ntBASIC4.1□□□□□ -1.75
SOX3P41225 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.1□□□□□ -1.75
SOX3P41225 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.1□□□□□ -1.75
SOX3P41225 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC4.1□□□□□ -1.75
SOX3P41225 AL022067.1-201ENST00000602426 454 ntBASIC4.1□□□□□ -1.75
SOX3P41225 AC090181.2-201ENST00000602975 672 ntBASIC4.1□□□□□ -1.75
SOX3P41225 AC103792.1-201ENST00000603591 919 ntBASIC4.1□□□□□ -1.75
SOX3P41225 AC096553.1-201ENST00000605169 829 ntBASIC4.1□□□□□ -1.75
SOX3P41225 AP002360.3-201ENST00000607673 710 ntBASIC4.1□□□□□ -1.75
SOX3P41225 MIR6798-201ENST00000612887 67 ntBASIC4.1□□□□□ -1.75
SOX3P41225 AL050303.3-201ENST00000613704 284 ntBASIC4.1□□□□□ -1.75
SOX3P41225 STMN1P1-201ENST00000617809 440 ntBASIC4.1□□□□□ -1.75
SOX3P41225 AC024595.1-201ENST00000623088 387 ntBASIC4.1□□□□□ -1.75
SOX3P41225 AC091905.2-201ENST00000623143 306 ntBASIC4.1□□□□□ -1.75
SOX3P41225 AC138907.10-201ENST00000623708 983 ntBASIC4.1□□□□□ -1.75
SOX3P41225 U6.107-201ENST00000637108 79 ntBASIC4.1□□□□□ -1.75
SOX3P41225 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX3P41225 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.1□□□□□ -1.75
SOX3P41225 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.1□□□□□ -1.75
SOX3P41225 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SOX3P41225 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.09□□□□□ -1.75
SOX3P41225 AC090017.1-201ENST00000548612 1779 ntBASIC4.09□□□□□ -1.75
SOX3P41225 AC092079.1-201ENST00000558620 1985 ntBASIC4.09□□□□□ -1.75
SOX3P41225 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.09□□□□□ -1.75
SOX3P41225 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.75
SOX3P41225 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.09□□□□□ -1.75
SOX3P41225 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SOX3P41225 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
SOX3P41225 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.09□□□□□ -1.75
SOX3P41225 RN7SKP224-201ENST00000364140 325 ntBASIC4.09□□□□□ -1.75
SOX3P41225 RNU1-63P-201ENST00000383902 164 ntBASIC4.09□□□□□ -1.75
SOX3P41225 MIR93-201ENST00000385024 80 ntBASIC4.09□□□□□ -1.75
SOX3P41225 SNORA68.2-201ENST00000391263 128 ntBASIC4.09□□□□□ -1.75
SOX3P41225 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
SOX3P41225 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.09□□□□□ -1.75
SOX3P41225 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.09□□□□□ -1.75
SOX3P41225 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.09□□□□□ -1.75
SOX3P41225 HLA-N-201ENST00000437516 135 ntBASIC4.09□□□□□ -1.75
SOX3P41225 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.09□□□□□ -1.75
SOX3P41225 PHBP16-201ENST00000446318 950 ntBASIC4.09□□□□□ -1.75
SOX3P41225 AL606517.1-201ENST00000446914 387 ntBASIC4.09□□□□□ -1.75
SOX3P41225 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.09□□□□□ -1.75
SOX3P41225 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.09□□□□□ -1.75
SOX3P41225 DHFRP3-201ENST00000455595 559 ntBASIC4.09□□□□□ -1.75
SOX3P41225 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.09□□□□□ -1.75
SOX3P41225 RN7SL98P-201ENST00000462271 300 ntBASIC4.09□□□□□ -1.75
SOX3P41225 RPS23P7-201ENST00000466210 444 ntBASIC4.09□□□□□ -1.75
SOX3P41225 AC104164.3-201ENST00000467363 1258 ntBASIC4.09□□□□□ -1.75
SOX3P41225 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
SOX3P41225 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC4.09□□□□□ -1.75
SOX3P41225 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.09□□□□□ -1.75
SOX3P41225 RNA5SP497-201ENST00000516081 97 ntBASIC4.09□□□□□ -1.75
SOX3P41225 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.09□□□□□ -1.75
SOX3P41225 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.09□□□□□ -1.75
SOX3P41225 AC021451.1-201ENST00000523498 1129 ntBASIC4.09□□□□□ -1.75
SOX3P41225 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.09□□□□□ -1.75
SOX3P41225 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC4.09□□□□□ -1.75
SOX3P41225 AC095057.3-201ENST00000567102 1157 ntBASIC4.09□□□□□ -1.75
SOX3P41225 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms