Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS35Q96QK1 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
VPS35Q96QK1 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.22□□□□□ -1.73
VPS35Q96QK1 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS35Q96QK1 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC4.21□□□□□ -1.73
VPS35Q96QK1 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.73
VPS35Q96QK1 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS35Q96QK1 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.21□□□□□ -1.74
VPS35Q96QK1 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS35Q96QK1 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS35Q96QK1 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS35Q96QK1 FAM3C2-201ENST00000312214 681 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS35Q96QK1 AC067945.1-201ENST00000342609 618 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 RNU1-15P-201ENST00000353977 144 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 MIR383-201ENST00000362257 73 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.74
VPS35Q96QK1 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS35Q96QK1 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS35Q96QK1 AL353692.2-201ENST00000407054 335 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 VN1R8P-201ENST00000407739 893 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 AL161631.1-201ENST00000417933 486 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 MTCO3P4-201ENST00000419236 787 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS35Q96QK1 C4BPAP2-201ENST00000428434 478 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 AL035458.1-201ENST00000433096 585 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 AC007000.2-201ENST00000442564 487 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 EEF1A1P1-201ENST00000447052 739 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 TPMTP4-201ENST00000450749 678 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 AC010683.1-201ENST00000473673 378 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS35Q96QK1 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS35Q96QK1 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS35Q96QK1 AC108475.1-201ENST00000507880 950 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS35Q96QK1 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS35Q96QK1 SNORD116-26-201ENST00000516006 96 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 RN7SKP141-201ENST00000516167 338 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.74
VPS35Q96QK1 IGLV3-26-201ENST00000520756 302 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 AP003730.1-201ENST00000524605 285 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS35Q96QK1 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS35Q96QK1 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS35Q96QK1 AC023575.1-201ENST00000580510 358 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 KPNA2P3-201ENST00000584190 848 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS35Q96QK1 AC040174.2-201ENST00000602701 465 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 AL161729.3-201ENST00000603533 673 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS35Q96QK1 MIR6716-201ENST00000613413 80 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS35Q96QK1 AL354696.1-201ENST00000614652 497 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 AC083809.1-201ENST00000615051 472 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS35Q96QK1 MIR6758-201ENST00000620653 63 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 MIR4727-201ENST00000622232 55 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 AC090617.9-201ENST00000623751 147 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 AP003072.4-201ENST00000624580 310 ntBASIC4.21□□□□□ -1.74
VPS35Q96QK1 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS35Q96QK1 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS35Q96QK1 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS35Q96QK1 ZNF90P1-201ENST00000480493 1951 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS35Q96QK1 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 AL161909.1-201ENST00000397390 712 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 TAF9BP2-201ENST00000400856 499 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 AL356057.1-202ENST00000402263 756 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 RPS23P10-201ENST00000416185 486 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 COX6CP17-201ENST00000421389 185 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 FO393419.3-201ENST00000428741 282 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 PRELID3BP10-201ENST00000431957 584 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 RPL7P28-201ENST00000437739 740 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 TPT1P12-201ENST00000448968 492 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 HMGB3P21-201ENST00000452483 547 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS35Q96QK1 AC108145.1-201ENST00000503770 153 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 PPBPP1-201ENST00000510807 373 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 AC092593.2-201ENST00000513866 913 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 AC099522.1-202ENST00000514718 367 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 AC138701.1-201ENST00000524329 714 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS35Q96QK1 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 TVP23BP1-201ENST00000557500 617 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 AC115085.1-201ENST00000588924 229 ntBASIC4.2□□□□□ -1.74
VPS35Q96QK1 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.2□□□□□ -1.74
VPS35Q96QK1 AL118556.2-201ENST00000614375 824 ntBASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 141.2 ms