Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNU5E-10P-201ENST00000363506 118 ntBASIC4.12□□□□□ -1.75
SOX3P41225 RNU1-130P-201ENST00000363930 160 ntBASIC4.12□□□□□ -1.75
SOX3P41225 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.12□□□□□ -1.75
SOX3P41225 U6.112-201ENST00000384129 70 ntBASIC4.12□□□□□ -1.75
SOX3P41225 RNU6-98P-201ENST00000384173 107 ntBASIC4.12□□□□□ -1.75
SOX3P41225 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.12□□□□□ -1.75
SOX3P41225 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SOX3P41225 VN1R8P-201ENST00000407739 893 ntBASIC4.12□□□□□ -1.75
SOX3P41225 RNU6-584P-201ENST00000410350 95 ntBASIC4.12□□□□□ -1.75
SOX3P41225 RNU4-25P-201ENST00000410569 230 ntBASIC4.12□□□□□ -1.75
SOX3P41225 AC106883.1-201ENST00000418805 562 ntBASIC4.12□□□□□ -1.75
SOX3P41225 COX6CP17-201ENST00000421389 185 ntBASIC4.12□□□□□ -1.75
SOX3P41225 SFR1P2-201ENST00000421841 730 ntBASIC4.12□□□□□ -1.75
SOX3P41225 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC4.12□□□□□ -1.75
SOX3P41225 AC011998.1-201ENST00000433403 117 ntBASIC4.12□□□□□ -1.75
SOX3P41225 RPL7P29-201ENST00000437151 728 ntBASIC4.12□□□□□ -1.75
SOX3P41225 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC4.12□□□□□ -1.75
SOX3P41225 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SOX3P41225 CBX1P1-201ENST00000440184 427 ntBASIC4.12□□□□□ -1.75
SOX3P41225 AC069285.2-201ENST00000440210 275 ntBASIC4.12□□□□□ -1.75
SOX3P41225 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC4.12□□□□□ -1.75
SOX3P41225 HSFY3P-201ENST00000444242 1191 ntBASIC4.12□□□□□ -1.75
SOX3P41225 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC4.12□□□□□ -1.75
SOX3P41225 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.12□□□□□ -1.75
SOX3P41225 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.12□□□□□ -1.75
SOX3P41225 CCNB1IP1P3-201ENST00000454702 829 ntBASIC4.12□□□□□ -1.75
SOX3P41225 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC4.12□□□□□ -1.75
SOX3P41225 RPS27AP17-201ENST00000463344 455 ntBASIC4.12□□□□□ -1.75
SOX3P41225 AC010469.1-201ENST00000463864 576 ntBASIC4.12□□□□□ -1.75
SOX3P41225 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.12□□□□□ -1.75
SOX3P41225 GTF2IP9-201ENST00000502460 301 ntBASIC4.12□□□□□ -1.75
SOX3P41225 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.12□□□□□ -1.75
SOX3P41225 AC111193.1-201ENST00000504097 155 ntBASIC4.12□□□□□ -1.75
SOX3P41225 snoU109.6-201ENST00000516831 118 ntBASIC4.12□□□□□ -1.75
SOX3P41225 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SOX3P41225 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.12□□□□□ -1.75
SOX3P41225 POLR2KP1-201ENST00000553226 168 ntBASIC4.12□□□□□ -1.75
SOX3P41225 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC4.12□□□□□ -1.75
SOX3P41225 BPIFA4P-203ENST00000603168 689 ntBASIC4.12□□□□□ -1.75
SOX3P41225 AC069431.2-201ENST00000604149 1099 ntBASIC4.12□□□□□ -1.75
SOX3P41225 AC027449.1-201ENST00000608890 407 ntBASIC4.12□□□□□ -1.75
SOX3P41225 AC055764.2-201ENST00000610089 670 ntBASIC4.12□□□□□ -1.75
SOX3P41225 uc_338.9-201ENST00000617424 182 ntBASIC4.12□□□□□ -1.75
SOX3P41225 AL121890.3-201ENST00000618494 516 ntBASIC4.12□□□□□ -1.75
SOX3P41225 AC022079.2-201ENST00000619739 566 ntBASIC4.12□□□□□ -1.75
SOX3P41225 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
SOX3P41225 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.12□□□□□ -1.75
SOX3P41225 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.12□□□□□ -1.75
SOX3P41225 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.12□□□□□ -1.75
SOX3P41225 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
SOX3P41225 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
SOX3P41225 AC139769.1-204ENST00000472297 1931 ntBASIC4.12□□□□□ -1.75
SOX3P41225 MFSD8-242ENST00000641690 4199 ntBASIC4.12□□□□□ -1.75
SOX3P41225 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
SOX3P41225 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SOX3P41225 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
SOX3P41225 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
SOX3P41225 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SOX3P41225 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SOX3P41225 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
SOX3P41225 SEC63P2-201ENST00000503863 1939 ntBASIC4.11□□□□□ -1.75
SOX3P41225 MAPK10-304ENST00000641341 3984 ntBASIC4.11□□□□□ -1.75
SOX3P41225 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
SOX3P41225 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
SOX3P41225 AP000568.1-201ENST00000282964 442 ntBASIC4.11□□□□□ -1.75
SOX3P41225 FAM3C2-201ENST00000312214 681 ntBASIC4.11□□□□□ -1.75
SOX3P41225 MIR448-201ENST00000362131 111 ntBASIC4.11□□□□□ -1.75
SOX3P41225 RNA5SP509-201ENST00000364577 119 ntBASIC4.11□□□□□ -1.75
SOX3P41225 RNA5SP22-201ENST00000365393 109 ntBASIC4.11□□□□□ -1.75
SOX3P41225 SNORA62-201ENST00000365493 153 ntBASIC4.11□□□□□ -1.75
SOX3P41225 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
SOX3P41225 RNU1-44P-201ENST00000384453 163 ntBASIC4.11□□□□□ -1.75
SOX3P41225 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SOX3P41225 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.11□□□□□ -1.75
SOX3P41225 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC4.11□□□□□ -1.75
SOX3P41225 FHP1-201ENST00000442741 703 ntBASIC4.11□□□□□ -1.75
SOX3P41225 CASP3P1-201ENST00000446037 609 ntBASIC4.11□□□□□ -1.75
SOX3P41225 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.11□□□□□ -1.75
SOX3P41225 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.11□□□□□ -1.75
SOX3P41225 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.11□□□□□ -1.75
SOX3P41225 WDR78-207ENST00000488333 613 ntTSL 3 BASIC4.11□□□□□ -1.75
SOX3P41225 AC026979.1-201ENST00000492525 396 ntBASIC4.11□□□□□ -1.75
SOX3P41225 AC026414.1-201ENST00000504046 698 ntBASIC4.11□□□□□ -1.75
SOX3P41225 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC4.11□□□□□ -1.75
SOX3P41225 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.11□□□□□ -1.75
SOX3P41225 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.11□□□□□ -1.75
SOX3P41225 AC125494.3-201ENST00000602759 455 ntBASIC4.11□□□□□ -1.75
SOX3P41225 AC008638.3-201ENST00000603341 463 ntBASIC4.11□□□□□ -1.75
SOX3P41225 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.11□□□□□ -1.75
SOX3P41225 AL445423.1-201ENST00000609941 536 ntBASIC4.11□□□□□ -1.75
SOX3P41225 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.11□□□□□ -1.75
SOX3P41225 AL138721.1-201ENST00000616756 179 ntBASIC4.11□□□□□ -1.75
SOX3P41225 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SOX3P41225 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.11□□□□□ -1.75
SOX3P41225 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.11□□□□□ -1.75
SOX3P41225 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.11□□□□□ -1.75
SOX3P41225 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SOX3P41225 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.11□□□□□ -1.75
SOX3P41225 NXPH1-205ENST00000602349 1953 ntBASIC4.11□□□□□ -1.75
SOX3P41225 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms