Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CUX1P39880 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CUX1P39880 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CUX1P39880 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC6.11□□□□□ -1.43
CUX1P39880 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.11□□□□□ -1.43
CUX1P39880 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC6.1□□□□□ -1.43
CUX1P39880 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CUX1P39880 IL6STP1-201ENST00000346911 1020 ntBASIC6.1□□□□□ -1.43
CUX1P39880 RNA5SP374-201ENST00000362939 125 ntBASIC6.1□□□□□ -1.43
CUX1P39880 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC6.1□□□□□ -1.43
CUX1P39880 AC006994.1-201ENST00000438212 839 ntBASIC6.1□□□□□ -1.43
CUX1P39880 AC127537.2-201ENST00000439258 465 ntBASIC6.1□□□□□ -1.43
CUX1P39880 RPL21P10-201ENST00000463521 490 ntBASIC6.1□□□□□ -1.43
CUX1P39880 AL136126.1-201ENST00000473603 402 ntBASIC6.1□□□□□ -1.43
CUX1P39880 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CUX1P39880 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC6.1□□□□□ -1.43
CUX1P39880 AC098799.1-201ENST00000504752 800 ntBASIC6.1□□□□□ -1.43
CUX1P39880 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC6.1□□□□□ -1.43
CUX1P39880 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC6.1□□□□□ -1.43
CUX1P39880 OR51C1P-201ENST00000608504 942 ntBASIC6.1□□□□□ -1.43
CUX1P39880 AC015722.2-201ENST00000622210 551 ntBASIC6.1□□□□□ -1.43
CUX1P39880 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC6.1□□□□□ -1.43
CUX1P39880 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CUX1P39880 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CUX1P39880 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CUX1P39880 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
CUX1P39880 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
CUX1P39880 AP000542.2-201ENST00000623199 6179 ntBASIC6.1□□□□□ -1.43
CUX1P39880 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
CUX1P39880 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
CUX1P39880 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC6.09□□□□□ -1.43
CUX1P39880 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC6.09□□□□□ -1.43
CUX1P39880 RPS15AP29-201ENST00000445539 400 ntBASIC6.09□□□□□ -1.43
CUX1P39880 UBA52P3-201ENST00000491303 382 ntBASIC6.09□□□□□ -1.43
CUX1P39880 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC6.09□□□□□ -1.43
CUX1P39880 AC009303.3-201ENST00000591103 736 ntBASIC6.09□□□□□ -1.43
CUX1P39880 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC6.09□□□□□ -1.43
CUX1P39880 AL354976.1-201ENST00000613843 387 ntBASIC6.09□□□□□ -1.43
CUX1P39880 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC6.09□□□□□ -1.43
CUX1P39880 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CUX1P39880 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC6.09□□□□□ -1.43
CUX1P39880 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC6.09□□□□□ -1.43
CUX1P39880 GSTM3P2-201ENST00000412746 530 ntBASIC6.09□□□□□ -1.44
CUX1P39880 OR6C71P-201ENST00000432580 913 ntBASIC6.09□□□□□ -1.44
CUX1P39880 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC6.09□□□□□ -1.44
CUX1P39880 AC006480.1-201ENST00000449887 378 ntBASIC6.09□□□□□ -1.44
CUX1P39880 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC6.09□□□□□ -1.44
CUX1P39880 AC006116.10-201ENST00000591836 581 ntBASIC6.09□□□□□ -1.44
CUX1P39880 AC069209.1-201ENST00000619282 651 ntBASIC6.09□□□□□ -1.44
CUX1P39880 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC6.09□□□□□ -1.44
CUX1P39880 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
CUX1P39880 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.44
CUX1P39880 TCP1P3-201ENST00000414406 1498 ntBASIC6.09□□□□□ -1.44
CUX1P39880 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC6.08□□□□□ -1.44
CUX1P39880 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CUX1P39880 AC090337.1-201ENST00000579651 2074 ntBASIC6.08□□□□□ -1.44
CUX1P39880 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CUX1P39880 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC6.08□□□□□ -1.44
CUX1P39880 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC6.08□□□□□ -1.44
CUX1P39880 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
CUX1P39880 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CUX1P39880 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CUX1P39880 RNA5SP146-201ENST00000410743 123 ntBASIC6.08□□□□□ -1.44
CUX1P39880 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC6.08□□□□□ -1.44
CUX1P39880 MIR4513-201ENST00000581077 86 ntBASIC6.08□□□□□ -1.44
CUX1P39880 MIMT1-201ENST00000597105 1050 ntBASIC6.08□□□□□ -1.44
CUX1P39880 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CUX1P39880 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CUX1P39880 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CUX1P39880 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC6.08□□□□□ -1.44
CUX1P39880 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC6.08□□□□□ -1.44
CUX1P39880 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC6.08□□□□□ -1.44
CUX1P39880 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
CUX1P39880 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
CUX1P39880 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CUX1P39880 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CUX1P39880 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CUX1P39880 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
CUX1P39880 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
CUX1P39880 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CUX1P39880 AC118273.1-201ENST00000525324 3006 ntBASIC6.07□□□□□ -1.44
CUX1P39880 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
CUX1P39880 SNORA48.5-201ENST00000391143 135 ntBASIC6.07□□□□□ -1.44
CUX1P39880 AL691447.1-201ENST00000419456 387 ntBASIC6.07□□□□□ -1.44
CUX1P39880 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC6.07□□□□□ -1.44
CUX1P39880 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC6.07□□□□□ -1.44
CUX1P39880 AP001486.1-201ENST00000463339 476 ntBASIC6.07□□□□□ -1.44
CUX1P39880 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC6.07□□□□□ -1.44
CUX1P39880 NCAPGP2-201ENST00000557911 754 ntBASIC6.07□□□□□ -1.44
CUX1P39880 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC6.07□□□□□ -1.44
CUX1P39880 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC6.07□□□□□ -1.44
CUX1P39880 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
CUX1P39880 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CUX1P39880 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
CUX1P39880 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC6.07□□□□□ -1.44
CUX1P39880 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CUX1P39880 Z95331.1-201ENST00000623075 23112 ntBASIC6.06□□□□□ -1.44
CUX1P39880 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC6.06□□□□□ -1.44
CUX1P39880 MIR1289-1-201ENST00000408836 144 ntBASIC6.06□□□□□ -1.44
CUX1P39880 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms