Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXD3P31249 AC092354.2-201ENST00000607786 514 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 AL139124.1-201ENST00000609123 421 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXD3P31249 AC005962.2-201ENST00000611427 652 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD3P31249 AC006338.2-201ENST00000616864 791 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 AC009509.4-201ENST00000619202 509 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
HOXD3P31249 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXD3P31249 AL356266.1-201ENST00000623311 483 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
HOXD3P31249 AP001784.1-201ENST00000624107 428 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 MKKS-204ENST00000639674 192 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 AC073869.8-201ENST00000641806 335 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 AC099063.3-201ENST00000642066 185 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
HOXD3P31249 AL355488.2-201ENST00000609909 2850 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC4.16□□□□□ -1.74
HOXD3P31249 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC4.16□□□□□ -1.74
HOXD3P31249 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
HOXD3P31249 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD3P31249 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXD3P31249 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
HOXD3P31249 AC107982.1-201ENST00000507171 1300 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXD3P31249 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC4.16□□□□□ -1.74
HOXD3P31249 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
HOXD3P31249 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
HOXD3P31249 BTBD10P1-201ENST00000549824 1352 ntBASIC4.15□□□□□ -1.74
HOXD3P31249 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
HOXD3P31249 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.74
HOXD3P31249 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
HOXD3P31249 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
HOXD3P31249 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
HOXD3P31249 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.15□□□□□ -1.74
HOXD3P31249 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.74
HOXD3P31249 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.74
HOXD3P31249 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.15□□□□□ -1.74
HOXD3P31249 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
HOXD3P31249 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
HOXD3P31249 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
HOXD3P31249 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXD3P31249 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD3P31249 U3.2-201ENST00000362981 210 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 RNU6-492P-201ENST00000363035 104 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
HOXD3P31249 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
HOXD3P31249 RNU1-149P-201ENST00000390870 161 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 RNA5SP339-201ENST00000390987 122 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 DEFB108C-201ENST00000400154 252 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 AL139098.1-201ENST00000407291 389 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
HOXD3P31249 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.15□□□□□ -1.75
HOXD3P31249 RNA5SP487-201ENST00000410186 122 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 RNU2-50P-201ENST00000410494 143 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 PGBD4P8-201ENST00000412993 562 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 AC004022.2-201ENST00000413824 193 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 FCF1P2-201ENST00000415284 583 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXD3P31249 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXD3P31249 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXD3P31249 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC4.15□□□□□ -1.75
HOXD3P31249 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD3P31249 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXD3P31249 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXD3P31249 AL513175.1-201ENST00000431492 780 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD3P31249 LARP1BP3-201ENST00000437229 869 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 NDUFAF4P4-201ENST00000454883 502 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 ARPC3P2-201ENST00000457786 533 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 RNU6-956P-201ENST00000458868 103 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 RN7SL97P-201ENST00000486780 299 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 RPL7P38-201ENST00000488396 739 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD3P31249 NDUFB5P1-201ENST00000508134 564 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXD3P31249 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXD3P31249 RNU6-941P-201ENST00000516346 108 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 FTH1P11-201ENST00000517577 551 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC4.15□□□□□ -1.75
HOXD3P31249 HIGD1AP6-201ENST00000521833 279 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXD3P31249 AP001189.2-201ENST00000527320 189 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 AL139174.1-201ENST00000531489 886 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 OR8G3P-201ENST00000533406 921 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 AP004607.2-201ENST00000533949 322 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
HOXD3P31249 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXD3P31249 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC4.15□□□□□ -1.75
HOXD3P31249 PCNPP1-201ENST00000552501 511 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 GTF2IP22-201ENST00000554443 182 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 PSMB7P1-201ENST00000556349 514 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXD3P31249 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC4.15□□□□□ -1.75
HOXD3P31249 AP001094.1-201ENST00000579805 193 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 MIR4646-201ENST00000580775 63 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXD3P31249 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXD3P31249 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms