Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SDC3O75056 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC4.22□□□□□ -1.73
SDC3O75056 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.22□□□□□ -1.73
SDC3O75056 PPM1AP1-201ENST00000502740 1135 ntBASIC4.22□□□□□ -1.73
SDC3O75056 AC010374.1-201ENST00000503762 1237 ntBASIC4.22□□□□□ -1.73
SDC3O75056 AC025459.1-201ENST00000504072 156 ntBASIC4.22□□□□□ -1.73
SDC3O75056 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.22□□□□□ -1.73
SDC3O75056 KCTD9P2-201ENST00000512203 1013 ntBASIC4.22□□□□□ -1.73
SDC3O75056 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.22□□□□□ -1.73
SDC3O75056 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.22□□□□□ -1.73
SDC3O75056 MYL12AP1-201ENST00000518490 515 ntBASIC4.22□□□□□ -1.73
SDC3O75056 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.22□□□□□ -1.73
SDC3O75056 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.22□□□□□ -1.73
SDC3O75056 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.22□□□□□ -1.73
SDC3O75056 AL109741.3-201ENST00000561748 592 ntBASIC4.22□□□□□ -1.73
SDC3O75056 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.22□□□□□ -1.73
SDC3O75056 AC233266.2-201ENST00000567067 528 ntBASIC4.22□□□□□ -1.73
SDC3O75056 HNRNPCP4-201ENST00000571636 900 ntBASIC4.22□□□□□ -1.73
SDC3O75056 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC4.22□□□□□ -1.73
SDC3O75056 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC4.22□□□□□ -1.73
SDC3O75056 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.22□□□□□ -1.73
SDC3O75056 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.22□□□□□ -1.73
SDC3O75056 ZNF92P3-201ENST00000596594 954 ntBASIC4.22□□□□□ -1.73
SDC3O75056 BNIP3P33-201ENST00000598912 569 ntBASIC4.22□□□□□ -1.73
SDC3O75056 MIR6875-201ENST00000617506 72 ntBASIC4.22□□□□□ -1.73
SDC3O75056 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC4.22□□□□□ -1.73
SDC3O75056 AC140113.4-201ENST00000622087 222 ntBASIC4.22□□□□□ -1.73
SDC3O75056 AL356863.1-201ENST00000623378 1080 ntBASIC4.22□□□□□ -1.73
SDC3O75056 CR392039.4-201ENST00000624968 501 ntBASIC4.22□□□□□ -1.73
SDC3O75056 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC4.22□□□□□ -1.73
SDC3O75056 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.22□□□□□ -1.73
SDC3O75056 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SDC3O75056 MTND4P26-201ENST00000415971 1359 ntBASIC4.22□□□□□ -1.73
SDC3O75056 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.22□□□□□ -1.73
SDC3O75056 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
SDC3O75056 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.22□□□□□ -1.73
SDC3O75056 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SDC3O75056 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SDC3O75056 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SDC3O75056 ZNF90P1-201ENST00000480493 1951 ntBASIC4.22□□□□□ -1.73
SDC3O75056 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.21□□□□□ -1.73
SDC3O75056 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
SDC3O75056 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.21□□□□□ -1.74
SDC3O75056 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.21□□□□□ -1.74
SDC3O75056 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SDC3O75056 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SDC3O75056 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SDC3O75056 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SDC3O75056 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.21□□□□□ -1.74
SDC3O75056 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SDC3O75056 RAD1P1-201ENST00000231383 813 ntBASIC4.21□□□□□ -1.74
SDC3O75056 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SDC3O75056 RPL21P65-201ENST00000406094 466 ntBASIC4.21□□□□□ -1.74
SDC3O75056 USP9YP19-201ENST00000412165 485 ntBASIC4.21□□□□□ -1.74
SDC3O75056 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC4.21□□□□□ -1.74
SDC3O75056 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.21□□□□□ -1.74
SDC3O75056 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.21□□□□□ -1.74
SDC3O75056 AC004448.2-201ENST00000422360 586 ntBASIC4.21□□□□□ -1.74
SDC3O75056 FO393419.3-201ENST00000428741 282 ntBASIC4.21□□□□□ -1.74
SDC3O75056 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.21□□□□□ -1.74
SDC3O75056 AL513321.1-201ENST00000441175 761 ntBASIC4.21□□□□□ -1.74
SDC3O75056 AC017099.1-201ENST00000448261 1028 ntBASIC4.21□□□□□ -1.74
SDC3O75056 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SDC3O75056 HMGB3P21-201ENST00000452483 547 ntBASIC4.21□□□□□ -1.74
SDC3O75056 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SDC3O75056 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.21□□□□□ -1.74
SDC3O75056 RPL7P22-201ENST00000466005 733 ntBASIC4.21□□□□□ -1.74
SDC3O75056 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SDC3O75056 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.21□□□□□ -1.74
SDC3O75056 AC111193.1-201ENST00000504097 155 ntBASIC4.21□□□□□ -1.74
SDC3O75056 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.21□□□□□ -1.74
SDC3O75056 RN7SKP141-201ENST00000516167 338 ntBASIC4.21□□□□□ -1.74
SDC3O75056 RNU1-45P-201ENST00000517191 141 ntBASIC4.21□□□□□ -1.74
SDC3O75056 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.74
SDC3O75056 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC4.21□□□□□ -1.74
SDC3O75056 AC090819.1-201ENST00000523800 1111 ntBASIC4.21□□□□□ -1.74
SDC3O75056 HAUS1P3-201ENST00000523909 662 ntBASIC4.21□□□□□ -1.74
SDC3O75056 AC105233.3-201ENST00000531125 744 ntBASIC4.21□□□□□ -1.74
SDC3O75056 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.21□□□□□ -1.74
SDC3O75056 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.21□□□□□ -1.74
SDC3O75056 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.21□□□□□ -1.74
SDC3O75056 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.21□□□□□ -1.74
SDC3O75056 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC4.21□□□□□ -1.74
SDC3O75056 MIR4429-201ENST00000580105 73 ntBASIC4.21□□□□□ -1.74
SDC3O75056 MIR4512-201ENST00000583257 77 ntBASIC4.21□□□□□ -1.74
SDC3O75056 AC006130.2-201ENST00000586202 326 ntBASIC4.21□□□□□ -1.74
SDC3O75056 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.21□□□□□ -1.74
SDC3O75056 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.21□□□□□ -1.74
SDC3O75056 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.21□□□□□ -1.74
SDC3O75056 Z98200.1-201ENST00000607298 470 ntBASIC4.21□□□□□ -1.74
SDC3O75056 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.21□□□□□ -1.74
SDC3O75056 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC4.21□□□□□ -1.74
SDC3O75056 AL645927.2-201ENST00000618350 349 ntBASIC4.21□□□□□ -1.74
SDC3O75056 AP006248.2-201ENST00000623309 592 ntBASIC4.21□□□□□ -1.74
SDC3O75056 AL356094.1-201ENST00000624663 1212 ntBASIC4.21□□□□□ -1.74
SDC3O75056 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SDC3O75056 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.21□□□□□ -1.74
SDC3O75056 RNF6P1-201ENST00000444889 1784 ntBASIC4.21□□□□□ -1.74
SDC3O75056 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.21□□□□□ -1.74
SDC3O75056 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms