Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 MEMO1P3-201ENST00000459811 302 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 RN7SL174P-201ENST00000475578 289 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AP000797.1-201ENST00000478870 387 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 RN7SL101P-201ENST00000496350 279 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC021678.1-201ENST00000505195 936 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 DUTP7-201ENST00000507982 486 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC006499.2-201ENST00000513470 337 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 NRBF2P4-201ENST00000520874 850 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 NPM1P6-201ENST00000521088 871 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC027544.3-201ENST00000535082 757 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 LSM6P2-201ENST00000552208 177 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 NMNAT1P1-201ENST00000554095 876 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AL389895.1-201ENST00000554127 252 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC019322.1-201ENST00000571869 389 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 SNORD39.3-201ENST00000584451 71 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC060780.2-201ENST00000589047 198 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC025857.2-201ENST00000602711 238 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 Z99129.1-201ENST00000612510 255 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC123768.4-201ENST00000616244 701 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AC091932.2-201ENST00000623014 291 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 LINC01963-201ENST00000562038 3148 ntBASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TRIM39Q9HCM9 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AL445437.1-201ENST00000623157 3087 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 RNU6-921P-201ENST00000384361 107 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 RPS24P12-201ENST00000402084 394 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 FCF1P9-201ENST00000412546 282 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AC109780.2-201ENST00000413467 845 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AC009302.1-201ENST00000417147 390 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AL133173.1-201ENST00000423458 397 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 CHEK2P5-201ENST00000423877 246 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 OFD1P13Y-201ENST00000431179 1232 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 MTATP6P13-201ENST00000438531 667 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 RPL23AP16-201ENST00000441715 421 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 RN7SL72P-201ENST00000460697 269 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 RPL7AP10-201ENST00000481016 791 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 PRELID3BP7-201ENST00000503606 469 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AC109464.2-201ENST00000510242 943 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 IGLV3-24-201ENST00000517477 197 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 IGHV3-32-201ENST00000519182 355 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 IGLVVI-25-1-201ENST00000521893 249 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AP000790.1-201ENST00000528891 737 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AL139174.1-201ENST00000531489 886 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AC008127.2-201ENST00000549925 1075 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AC093591.2-201ENST00000565254 3843 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AL121834.1-201ENST00000572284 509 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 MTND1P15-201ENST00000579262 949 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 SNORD95-201ENST00000579879 68 ntBASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms