Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AP002906.1-201ENST00000603405 233 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AC008966.2-201ENST00000606157 453 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 uc_338.9-201ENST00000617424 182 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 ZYXP1-201ENST00000617638 118 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 STMN1P1-201ENST00000617809 440 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 Z95327.2-201ENST00000414579 1873 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AL121657.1-201ENST00000327215 531 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 RNA5SP27-201ENST00000363839 119 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 RNA5SP28-201ENST00000363841 119 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 RNU1-130P-201ENST00000363930 160 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 RNU6-932P-201ENST00000391108 106 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AC093719.1-202ENST00000392735 373 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 RPS26P8-201ENST00000393490 348 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 FCF1P5-201ENST00000406490 482 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 SNRPFP1-201ENST00000414761 252 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 MTND2P9-201ENST00000422293 931 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 RPL7P29-201ENST00000437151 728 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 RPS26P2-201ENST00000440331 348 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 HMGB3P9-201ENST00000441799 583 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 RPL23AP12-201ENST00000467573 473 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 UQCRHP4-201ENST00000471686 272 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 CAB39P1-201ENST00000502277 460 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AF186190.1-201ENST00000517470 480 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 POLR2KP1-201ENST00000553226 168 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AC010735.1-201ENST00000567305 1026 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AC090666.1-201ENST00000578241 445 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AC012254.4-201ENST00000588843 273 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AC104763.3-201ENST00000613765 618 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AC126544.2-201ENST00000625174 749 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 LINC01109-201ENST00000603837 3081 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 AC006042.3-201ENST00000454684 1469 ntBASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
CCDC3Q9BQI4 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 MAPK10-349ENST00000641767 3661 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 OR5P1P-201ENST00000299512 925 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 OR56B2P-201ENST00000317102 954 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 RNU6-543P-201ENST00000362576 108 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 NCSTNP1-201ENST00000406229 144 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 RN7SKP27-201ENST00000410684 333 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC073136.2-201ENST00000417282 849 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AL590609.2-201ENST00000421430 368 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC241520.1-201ENST00000422654 1099 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 PTP4A1P7-201ENST00000423476 514 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 RPL21P43-201ENST00000425440 472 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 FO393414.1-201ENST00000428697 1184 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 RPL23AP25-201ENST00000430973 463 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 KCTD10P1-201ENST00000434203 625 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 138.9 ms