Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 COX6CP3-201ENST00000580869 223 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 MIR4512-201ENST00000583257 77 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 GLUD1P4-201ENST00000590914 418 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AC004805.3-201ENST00000603178 310 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AC010424.2-201ENST00000607594 443 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AC040168.1-201ENST00000623594 991 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AC135068.11-201ENST00000636378 921 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 DHX40P1-201ENST00000588725 1412 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 MTND5P17-201ENST00000418405 1603 ntBASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC140Q96MF4 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 EEF1A1P24-201ENST00000451469 1378 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AP000866.6-201ENST00000638898 3579 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC008957.3-201ENST00000624112 2242 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 RPL7P26-201ENST00000333817 754 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 RNU6-845P-201ENST00000362578 103 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 RNU5A-8P-201ENST00000364102 114 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 MRPS6P2-201ENST00000381143 370 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 RNU6-74P-201ENST00000384235 107 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 RNU6-39P-201ENST00000384344 107 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 Y_RNA.535-201ENST00000384612 99 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 MIR19A-201ENST00000384878 82 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 OR4K11P-201ENST00000431829 904 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AL022324.2-201ENST00000434827 780 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 PPIAP32-201ENST00000449940 472 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 CACYBPP2-201ENST00000453625 678 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 RPS27AP17-201ENST00000463344 455 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 RPL24-206ENST00000495401 478 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 RN7SL612P-201ENST00000497704 295 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC111000.3-201ENST00000508057 576 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 MTND6P2-201ENST00000512226 524 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC093816.1-201ENST00000515076 913 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 MRPS5P3-201ENST00000515577 166 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AP003072.2-201ENST00000527756 676 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC243972.3-201ENST00000539655 198 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 RPL21P12-201ENST00000559810 515 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 CYCSP38-201ENST00000559840 322 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 OR4K8P-201ENST00000578842 1048 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC067852.5-201ENST00000589299 310 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC010525.2-201ENST00000590920 195 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 IGKV2OR2-7-201ENST00000604652 304 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC114477.1-201ENST00000605097 605 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC233309.1-201ENST00000619522 751 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms