Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
CUX1P39880 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC6.15□□□□□ -1.42
CUX1P39880 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC6.15□□□□□ -1.42
CUX1P39880 RPL26P28-201ENST00000451325 435 ntBASIC6.15□□□□□ -1.42
CUX1P39880 AC025518.1-201ENST00000479856 347 ntBASIC6.15□□□□□ -1.42
CUX1P39880 AC017037.1-201ENST00000508460 471 ntBASIC6.15□□□□□ -1.42
CUX1P39880 AC021146.3-201ENST00000511911 260 ntBASIC6.15□□□□□ -1.42
CUX1P39880 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC6.15□□□□□ -1.42
CUX1P39880 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC6.15□□□□□ -1.42
CUX1P39880 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC6.15□□□□□ -1.42
CUX1P39880 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC6.15□□□□□ -1.42
CUX1P39880 AC010300.1-201ENST00000600671 5134 ntBASIC6.15□□□□□ -1.42
CUX1P39880 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CUX1P39880 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
CUX1P39880 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
CUX1P39880 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.43
CUX1P39880 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
CUX1P39880 RN7SKP74-201ENST00000362849 309 ntBASIC6.15□□□□□ -1.43
CUX1P39880 HDGFP1-201ENST00000405943 252 ntBASIC6.15□□□□□ -1.43
CUX1P39880 KCTD9P3-201ENST00000434597 1169 ntBASIC6.15□□□□□ -1.43
CUX1P39880 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC6.15□□□□□ -1.43
CUX1P39880 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
CUX1P39880 RN7SL809P-201ENST00000482040 297 ntBASIC6.15□□□□□ -1.43
CUX1P39880 PHBP14-201ENST00000512887 367 ntBASIC6.15□□□□□ -1.43
CUX1P39880 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC6.15□□□□□ -1.43
CUX1P39880 CR392039.4-201ENST00000624968 501 ntBASIC6.15□□□□□ -1.43
CUX1P39880 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
CUX1P39880 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
CUX1P39880 AC093535.2-201ENST00000624769 2326 ntBASIC6.14□□□□□ -1.43
CUX1P39880 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CUX1P39880 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CUX1P39880 MAPK10-253ENST00000641010 4072 ntBASIC6.14□□□□□ -1.43
CUX1P39880 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CUX1P39880 AC009229.4-201ENST00000623854 1947 ntBASIC6.14□□□□□ -1.43
CUX1P39880 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
CUX1P39880 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
CUX1P39880 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
CUX1P39880 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC6.14□□□□□ -1.43
CUX1P39880 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CUX1P39880 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
CUX1P39880 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC6.14□□□□□ -1.43
CUX1P39880 EPGN-201ENST00000332112 847 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CUX1P39880 BMS1P3-201ENST00000372011 932 ntBASIC6.14□□□□□ -1.43
CUX1P39880 Z75741.1-201ENST00000446793 314 ntBASIC6.14□□□□□ -1.43
CUX1P39880 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC6.14□□□□□ -1.43
CUX1P39880 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC6.14□□□□□ -1.43
CUX1P39880 MIR5186-201ENST00000577504 120 ntBASIC6.14□□□□□ -1.43
CUX1P39880 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC6.14□□□□□ -1.43
CUX1P39880 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CUX1P39880 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
CUX1P39880 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC6.14□□□□□ -1.43
CUX1P39880 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC6.14□□□□□ -1.43
CUX1P39880 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CUX1P39880 DDX18P4-201ENST00000511690 1966 ntBASIC6.13□□□□□ -1.43
CUX1P39880 SMG1P4-204ENST00000523028 4131 ntBASIC6.13□□□□□ -1.43
CUX1P39880 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.13□□□□□ -1.43
CUX1P39880 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
CUX1P39880 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC6.13□□□□□ -1.43
CUX1P39880 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CUX1P39880 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC6.13□□□□□ -1.43
CUX1P39880 MIR4325-201ENST00000583049 90 ntBASIC6.13□□□□□ -1.43
CUX1P39880 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC6.13□□□□□ -1.43
CUX1P39880 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
CUX1P39880 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
CUX1P39880 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
CUX1P39880 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CUX1P39880 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC6.12□□□□□ -1.43
CUX1P39880 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CUX1P39880 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CUX1P39880 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CUX1P39880 TANK-206ENST00000406287 875 ntTSL 5 BASIC6.12□□□□□ -1.43
CUX1P39880 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC6.12□□□□□ -1.43
CUX1P39880 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC6.12□□□□□ -1.43
CUX1P39880 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC6.12□□□□□ -1.43
CUX1P39880 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC6.12□□□□□ -1.43
CUX1P39880 PPBPP1-201ENST00000510807 373 ntBASIC6.12□□□□□ -1.43
CUX1P39880 AC068993.1-201ENST00000546724 589 ntBASIC6.12□□□□□ -1.43
CUX1P39880 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC6.12□□□□□ -1.43
CUX1P39880 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC6.12□□□□□ -1.43
CUX1P39880 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC6.12□□□□□ -1.43
CUX1P39880 AL133247.2-201ENST00000603236 482 ntBASIC6.12□□□□□ -1.43
CUX1P39880 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC6.12□□□□□ -1.43
CUX1P39880 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC6.12□□□□□ -1.43
CUX1P39880 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CUX1P39880 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CUX1P39880 HCFC2P1-201ENST00000392864 1592 ntBASIC6.11□□□□□ -1.43
CUX1P39880 SDCBPP2-201ENST00000424643 885 ntBASIC6.11□□□□□ -1.43
CUX1P39880 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC6.11□□□□□ -1.43
CUX1P39880 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC6.11□□□□□ -1.43
CUX1P39880 RN7SL807P-201ENST00000470923 297 ntBASIC6.11□□□□□ -1.43
CUX1P39880 RPL21P13-201ENST00000488305 481 ntBASIC6.11□□□□□ -1.43
CUX1P39880 HIGD1AP18-201ENST00000520730 278 ntBASIC6.11□□□□□ -1.43
CUX1P39880 AC023161.2-201ENST00000551218 780 ntBASIC6.11□□□□□ -1.43
CUX1P39880 MTND6P33-201ENST00000571794 183 ntBASIC6.11□□□□□ -1.43
CUX1P39880 AC125494.3-201ENST00000602759 455 ntBASIC6.11□□□□□ -1.43
CUX1P39880 AC115621.1-201ENST00000604653 858 ntBASIC6.11□□□□□ -1.43
CUX1P39880 BNIP3P41-202ENST00000616656 861 ntBASIC6.11□□□□□ -1.43
CUX1P39880 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC6.11□□□□□ -1.43
CUX1P39880 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC6.11□□□□□ -1.43
CUX1P39880 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms