Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC3.72□□□□□ -1.81
COL5A1P20908 AC010680.3-201ENST00000604215 520 ntBASIC3.72□□□□□ -1.81
COL5A1P20908 AC011816.2-201ENST00000607089 556 ntBASIC3.72□□□□□ -1.81
COL5A1P20908 SCARNA15.3-201ENST00000626315 122 ntBASIC3.72□□□□□ -1.81
COL5A1P20908 SCARNA4.1-201ENST00000628597 123 ntBASIC3.72□□□□□ -1.81
COL5A1P20908 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL5A1P20908 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL5A1P20908 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.71□□□□□ -1.81
COL5A1P20908 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL5A1P20908 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL5A1P20908 MAPK10-320ENST00000641462 6696 ntBASIC3.71□□□□□ -1.82
COL5A1P20908 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
COL5A1P20908 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL5A1P20908 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
COL5A1P20908 RNA5SP267-201ENST00000364893 126 ntBASIC3.71□□□□□ -1.82
COL5A1P20908 MIR1289-1-201ENST00000408836 144 ntBASIC3.71□□□□□ -1.82
COL5A1P20908 RPS29P4-201ENST00000414733 161 ntBASIC3.71□□□□□ -1.82
COL5A1P20908 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.71□□□□□ -1.82
COL5A1P20908 AC092447.2-201ENST00000435487 669 ntBASIC3.71□□□□□ -1.82
COL5A1P20908 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
COL5A1P20908 RPL21P23-201ENST00000446654 460 ntBASIC3.71□□□□□ -1.82
COL5A1P20908 MTND6P6-201ENST00000478031 263 ntBASIC3.71□□□□□ -1.82
COL5A1P20908 RN7SL271P-201ENST00000487601 295 ntBASIC3.71□□□□□ -1.82
COL5A1P20908 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
COL5A1P20908 CYP4A43P-201ENST00000568156 121 ntBASIC3.71□□□□□ -1.82
COL5A1P20908 AL513477.2-201ENST00000607858 568 ntBASIC3.71□□□□□ -1.82
COL5A1P20908 AL355365.1-201ENST00000616480 294 ntBASIC3.71□□□□□ -1.82
COL5A1P20908 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC3.71□□□□□ -1.82
COL5A1P20908 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.71□□□□□ -1.82
COL5A1P20908 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.71□□□□□ -1.82
COL5A1P20908 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.71□□□□□ -1.82
COL5A1P20908 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL5A1P20908 USP8P1-201ENST00000494673 3183 ntBASIC3.71□□□□□ -1.82
COL5A1P20908 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL5A1P20908 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.71□□□□□ -1.82
COL5A1P20908 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL5A1P20908 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
COL5A1P20908 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
COL5A1P20908 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL5A1P20908 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL5A1P20908 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
COL5A1P20908 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.7□□□□□ -1.82
COL5A1P20908 Z74696.2-201ENST00000436514 498 ntBASIC3.7□□□□□ -1.82
COL5A1P20908 HMGB1P37-201ENST00000439613 609 ntBASIC3.7□□□□□ -1.82
COL5A1P20908 RPSAP41-201ENST00000439695 860 ntBASIC3.7□□□□□ -1.82
COL5A1P20908 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.7□□□□□ -1.82
COL5A1P20908 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC3.7□□□□□ -1.82
COL5A1P20908 AC017037.1-201ENST00000508460 471 ntBASIC3.7□□□□□ -1.82
COL5A1P20908 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC3.7□□□□□ -1.82
COL5A1P20908 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC3.7□□□□□ -1.82
COL5A1P20908 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL5A1P20908 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL5A1P20908 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.7□□□□□ -1.82
COL5A1P20908 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.7□□□□□ -1.82
COL5A1P20908 AP000255.1-201ENST00000610276 676 ntBASIC3.7□□□□□ -1.82
COL5A1P20908 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.7□□□□□ -1.82
COL5A1P20908 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.7□□□□□ -1.82
COL5A1P20908 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC3.7□□□□□ -1.82
COL5A1P20908 AL596275.2-204ENST00000641628 552 ntBASIC3.7□□□□□ -1.82
COL5A1P20908 AL596275.2-206ENST00000641957 626 ntBASIC3.7□□□□□ -1.82
COL5A1P20908 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC3.7□□□□□ -1.82
COL5A1P20908 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL5A1P20908 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL5A1P20908 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.7□□□□□ -1.82
COL5A1P20908 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
COL5A1P20908 SNORA3C-201ENST00000408792 125 ntBASIC3.7□□□□□ -1.82
COL5A1P20908 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL5A1P20908 OR2X1P-201ENST00000421144 687 ntBASIC3.7□□□□□ -1.82
COL5A1P20908 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL5A1P20908 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC3.7□□□□□ -1.82
COL5A1P20908 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.7□□□□□ -1.82
COL5A1P20908 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL5A1P20908 RANP8-201ENST00000444720 713 ntBASIC3.7□□□□□ -1.82
COL5A1P20908 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.7□□□□□ -1.82
COL5A1P20908 RPL21P10-201ENST00000463521 490 ntBASIC3.7□□□□□ -1.82
COL5A1P20908 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
COL5A1P20908 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.7□□□□□ -1.82
COL5A1P20908 SETP14-201ENST00000497538 873 ntBASIC3.7□□□□□ -1.82
COL5A1P20908 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC3.7□□□□□ -1.82
COL5A1P20908 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC3.7□□□□□ -1.82
COL5A1P20908 AC115621.1-201ENST00000604653 858 ntBASIC3.7□□□□□ -1.82
COL5A1P20908 AC244258.1-201ENST00000637553 1071 ntBASIC3.7□□□□□ -1.82
COL5A1P20908 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL5A1P20908 NAMPTP1-201ENST00000440465 2514 ntBASIC3.69□□□□□ -1.82
COL5A1P20908 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.69□□□□□ -1.82
COL5A1P20908 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL5A1P20908 AC011266.1-201ENST00000624119 3569 ntBASIC3.69□□□□□ -1.82
COL5A1P20908 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL5A1P20908 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL5A1P20908 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC3.69□□□□□ -1.82
COL5A1P20908 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.69□□□□□ -1.82
COL5A1P20908 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC3.69□□□□□ -1.82
COL5A1P20908 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL5A1P20908 SNORD3H-201ENST00000384486 214 ntBASIC3.69□□□□□ -1.82
COL5A1P20908 RPS24P12-201ENST00000402084 394 ntBASIC3.69□□□□□ -1.82
COL5A1P20908 NACAP7-201ENST00000407371 609 ntBASIC3.69□□□□□ -1.82
COL5A1P20908 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC3.69□□□□□ -1.82
COL5A1P20908 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.69□□□□□ -1.82
COL5A1P20908 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC3.69□□□□□ -1.82
COL5A1P20908 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms