Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.77□□□□□ -1.81
COL6A3P12111 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC3.77□□□□□ -1.81
COL6A3P12111 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL6A3P12111 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.77□□□□□ -1.81
COL6A3P12111 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
COL6A3P12111 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL6A3P12111 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.77□□□□□ -1.81
COL6A3P12111 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC3.77□□□□□ -1.81
COL6A3P12111 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
COL6A3P12111 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
COL6A3P12111 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC3.77□□□□□ -1.81
COL6A3P12111 TRGV5P-201ENST00000419915 354 ntBASIC3.77□□□□□ -1.81
COL6A3P12111 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.77□□□□□ -1.81
COL6A3P12111 IFNA11P-201ENST00000446352 526 ntBASIC3.77□□□□□ -1.81
COL6A3P12111 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC3.77□□□□□ -1.81
COL6A3P12111 RPS4XP18-201ENST00000495480 763 ntBASIC3.77□□□□□ -1.81
COL6A3P12111 RAC1P2-201ENST00000511164 579 ntBASIC3.77□□□□□ -1.81
COL6A3P12111 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.77□□□□□ -1.81
COL6A3P12111 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.77□□□□□ -1.81
COL6A3P12111 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL6A3P12111 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
COL6A3P12111 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
COL6A3P12111 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
COL6A3P12111 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC3.77□□□□□ -1.81
COL6A3P12111 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.77□□□□□ -1.81
COL6A3P12111 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC3.77□□□□□ -1.81
COL6A3P12111 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC3.77□□□□□ -1.81
COL6A3P12111 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.77□□□□□ -1.81
COL6A3P12111 OR51C1P-201ENST00000608504 942 ntBASIC3.77□□□□□ -1.81
COL6A3P12111 U4.6-201ENST00000621618 127 ntBASIC3.77□□□□□ -1.81
COL6A3P12111 AC027287.1-201ENST00000553115 1453 ntBASIC3.77□□□□□ -1.81
COL6A3P12111 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL6A3P12111 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL6A3P12111 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC3.76□□□□□ -1.81
COL6A3P12111 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL6A3P12111 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL6A3P12111 Y_RNA.40-201ENST00000362645 93 ntBASIC3.76□□□□□ -1.81
COL6A3P12111 snoU13.23-201ENST00000458863 104 ntBASIC3.76□□□□□ -1.81
COL6A3P12111 SNRPCP3-201ENST00000474888 476 ntBASIC3.76□□□□□ -1.81
COL6A3P12111 AC091826.1-201ENST00000514065 313 ntBASIC3.76□□□□□ -1.81
COL6A3P12111 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC3.76□□□□□ -1.81
COL6A3P12111 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.76□□□□□ -1.81
COL6A3P12111 AC106734.1-201ENST00000568646 663 ntBASIC3.76□□□□□ -1.81
COL6A3P12111 AC016839.1-201ENST00000578162 867 ntBASIC3.76□□□□□ -1.81
COL6A3P12111 AC019278.1-201ENST00000623516 479 ntBASIC3.76□□□□□ -1.81
COL6A3P12111 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL6A3P12111 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL6A3P12111 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL6A3P12111 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL6A3P12111 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC3.76□□□□□ -1.81
COL6A3P12111 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL6A3P12111 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL6A3P12111 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL6A3P12111 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL6A3P12111 SNORA70B-201ENST00000384210 135 ntBASIC3.76□□□□□ -1.81
COL6A3P12111 GMCL1P2-201ENST00000605230 823 ntBASIC3.76□□□□□ -1.81
COL6A3P12111 AC073657.2-201ENST00000605661 303 ntBASIC3.76□□□□□ -1.81
COL6A3P12111 AC009464.1-201ENST00000615731 469 ntBASIC3.76□□□□□ -1.81
COL6A3P12111 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
COL6A3P12111 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL6A3P12111 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
COL6A3P12111 OR5H2-201ENST00000355273 945 ntBASIC3.75□□□□□ -1.81
COL6A3P12111 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
COL6A3P12111 RPL6P21-201ENST00000418672 846 ntBASIC3.75□□□□□ -1.81
COL6A3P12111 DBIP2-201ENST00000419076 262 ntBASIC3.75□□□□□ -1.81
COL6A3P12111 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.75□□□□□ -1.81
COL6A3P12111 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.75□□□□□ -1.81
COL6A3P12111 RNA5SP445-201ENST00000515889 115 ntBASIC3.75□□□□□ -1.81
COL6A3P12111 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC3.75□□□□□ -1.81
COL6A3P12111 AL096803.3-201ENST00000609032 532 ntBASIC3.75□□□□□ -1.81
COL6A3P12111 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC3.75□□□□□ -1.81
COL6A3P12111 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL6A3P12111 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL6A3P12111 AP000641.1-201ENST00000531988 1639 ntBASIC3.75□□□□□ -1.81
COL6A3P12111 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL6A3P12111 RNU1-44P-201ENST00000384453 163 ntBASIC3.75□□□□□ -1.81
COL6A3P12111 AL592291.1-201ENST00000403830 352 ntBASIC3.75□□□□□ -1.81
COL6A3P12111 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.75□□□□□ -1.81
COL6A3P12111 RNA5SP356-201ENST00000515972 94 ntBASIC3.75□□□□□ -1.81
COL6A3P12111 AL354760.1-201ENST00000608357 643 ntBASIC3.75□□□□□ -1.81
COL6A3P12111 Xist_exon4.1-201ENST00000615964 126 ntBASIC3.75□□□□□ -1.81
COL6A3P12111 AC231759.1-201ENST00000616455 597 ntBASIC3.75□□□□□ -1.81
COL6A3P12111 ZNF37A-202ENST00000361085 8738 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
COL6A3P12111 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
COL6A3P12111 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC3.75□□□□□ -1.81
COL6A3P12111 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC3.75□□□□□ -1.81
COL6A3P12111 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.75□□□□□ -1.81
COL6A3P12111 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL6A3P12111 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC3.75□□□□□ -1.81
COL6A3P12111 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.75□□□□□ -1.81
COL6A3P12111 NUP35P1-201ENST00000422734 947 ntBASIC3.75□□□□□ -1.81
COL6A3P12111 AL645931.1-201ENST00000439737 410 ntBASIC3.75□□□□□ -1.81
COL6A3P12111 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.75□□□□□ -1.81
COL6A3P12111 EEF1A1P37-201ENST00000522748 715 ntBASIC3.75□□□□□ -1.81
COL6A3P12111 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL6A3P12111 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL6A3P12111 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL6A3P12111 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC3.75□□□□□ -1.81
COL6A3P12111 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.75□□□□□ -1.81
COL6A3P12111 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms