Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.87□□□□□ -1.47
COL6A1P12109 IGKV1-32-201ENST00000519290 311 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.87□□□□□ -1.47
COL6A1P12109 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC5.87□□□□□ -1.47
COL6A1P12109 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC5.87□□□□□ -1.47
COL6A1P12109 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.87□□□□□ -1.47
COL6A1P12109 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A1P12109 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A1P12109 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.87□□□□□ -1.47
COL6A1P12109 AC060780.2-201ENST00000589047 198 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 AC090181.2-201ENST00000602975 672 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 AL109618.2-201ENST00000605527 211 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 AC099676.1-201ENST00000608886 657 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 AC138749.5-201ENST00000611461 208 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 AC100793.4-201ENST00000613683 429 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.87□□□□□ -1.47
COL6A1P12109 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC5.87□□□□□ -1.47
COL6A1P12109 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC5.87□□□□□ -1.47
COL6A1P12109 AC005539.1-201ENST00000443768 1479 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL6A1P12109 AC092747.4-201ENST00000620519 1861 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A1P12109 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.87□□□□□ -1.47
COL6A1P12109 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A1P12109 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A1P12109 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A1P12109 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A1P12109 AC068870.1-201ENST00000563737 2455 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.86□□□□□ -1.47
COL6A1P12109 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.86□□□□□ -1.47
COL6A1P12109 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A1P12109 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
COL6A1P12109 VN2R3P-201ENST00000422626 1412 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
COL6A1P12109 IL6STP1-201ENST00000346911 1020 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A1P12109 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.86□□□□□ -1.47
COL6A1P12109 DBIP1-201ENST00000401435 260 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 USP9YP33-201ENST00000412220 421 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 MTCYBP38-201ENST00000417160 1123 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 LINC01347-201ENST00000417964 355 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 RPL21P43-201ENST00000425440 472 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 RPL18P10-201ENST00000425606 538 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 OFD1P13Y-201ENST00000431179 1232 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A1P12109 USP9YP35-201ENST00000435696 412 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.86□□□□□ -1.47
COL6A1P12109 COX6CP2-201ENST00000444980 225 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 IGBP1P3-201ENST00000447449 1000 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 RPL5P32-201ENST00000454085 879 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.86□□□□□ -1.47
COL6A1P12109 APOOP2-201ENST00000461561 539 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 RPL7P18-201ENST00000478965 734 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 AC011825.1-201ENST00000484967 388 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 AC058823.1-201ENST00000485315 474 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 AC026979.1-201ENST00000492525 396 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A1P12109 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.86□□□□□ -1.47
COL6A1P12109 AC109458.1-201ENST00000508858 316 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 PRELID3BP4-201ENST00000515476 571 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 RNU6-347P-201ENST00000516658 105 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC5.86□□□□□ -1.47
COL6A1P12109 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.86□□□□□ -1.47
COL6A1P12109 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC5.86□□□□□ -1.47
COL6A1P12109 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC5.86□□□□□ -1.47
COL6A1P12109 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.86□□□□□ -1.47
COL6A1P12109 CCNG2P1-201ENST00000549521 1000 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 AC245505.1-201ENST00000556398 224 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 ATP5F1P7-201ENST00000567330 760 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 AC018552.3-201ENST00000567416 561 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC5.86□□□□□ -1.47
COL6A1P12109 MIR4284-201ENST00000578924 81 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 AC005771.1-201ENST00000585581 349 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 U73023.1-201ENST00000603134 700 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 AL031775.1-201ENST00000607014 887 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 AC011374.2-201ENST00000607135 526 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 AC055764.2-201ENST00000610089 670 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A1P12109 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
COL6A1P12109 AC024023.1-201ENST00000624530 922 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 AP003400.5-201ENST00000624827 617 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 AC127502.3-201ENST00000636170 1206 ntBASIC5.86□□□□□ -1.47
COL6A1P12109 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A1P12109 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A1P12109 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
COL6A1P12109 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A1P12109 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.85□□□□□ -1.47
COL6A1P12109 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A1P12109 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A1P12109 AL355852.1-201ENST00000454081 1771 ntBASIC5.85□□□□□ -1.47
COL6A1P12109 AL603750.1-201ENST00000624216 1717 ntBASIC5.85□□□□□ -1.47
COL6A1P12109 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A1P12109 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A1P12109 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A1P12109 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
COL6A1P12109 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A1P12109 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.85□□□□□ -1.47
COL6A1P12109 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A1P12109 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.85□□□□□ -1.47
COL6A1P12109 AL391994.1-201ENST00000254724 282 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms