Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 VN1R84P-201ENST00000593697 235 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC079610.2-201ENST00000604818 690 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AL591034.3-201ENST00000605511 685 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC064801.1-201ENST00000612025 407 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC138907.10-201ENST00000623708 983 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 MIR492-201ENST00000638676 116 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC010300.1-201ENST00000600671 5134 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 RNF6P1-201ENST00000444889 1784 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AP001273.1-201ENST00000624493 3152 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 RPS26P8-201ENST00000393490 348 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AL121882.1-201ENST00000422893 417 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AL390879.2-203ENST00000426943 1121 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 ARL4AP4-201ENST00000434170 518 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AL356276.2-201ENST00000435919 558 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC074367.1-201ENST00000438685 1125 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 MTND6P18-201ENST00000439477 513 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 RPS27P5-201ENST00000444247 244 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC069540.1-201ENST00000446320 988 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 TPMTP4-201ENST00000450749 678 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 NUTF2P7-201ENST00000453086 375 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 PRELID3BP5-201ENST00000508612 460 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 SMARCE1P4-201ENST00000523647 241 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 OSBPL9P3-201ENST00000534523 595 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC063950.1-201ENST00000552036 308 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 POLR2KP1-201ENST00000553226 168 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC110743.1-201ENST00000584870 478 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 ZNF92P2-201ENST00000600543 1059 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC007423.1-201ENST00000605009 627 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC011374.2-201ENST00000607135 526 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC090948.2-201ENST00000607363 564 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC245389.2-201ENST00000616023 576 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC242843.1-201ENST00000618702 573 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 MIR7154-201ENST00000620673 73 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 AC090506.2-201ENST00000624521 419 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 METTL8-219ENST00000640734 726 ntTSL 2 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 Z95327.2-201ENST00000414579 1873 ntBASIC4.22□□□□□ -1.73
LHX3Q9UBR4 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.22□□□□□ -1.73
LHX3Q9UBR4 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
LHX3Q9UBR4 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
LHX3Q9UBR4 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 AC093535.2-201ENST00000624769 2326 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 METTL21EP-201ENST00000298105 713 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 RNU11-4P-201ENST00000391149 133 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 AL022722.2-201ENST00000402519 180 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 AL590290.1-201ENST00000405336 380 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 RNA5SP317-201ENST00000410176 116 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 RNA5SP311-201ENST00000411290 116 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms