Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC097713.2-201ENST00000430199 356 ntBASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 AC012123.2-201ENST00000485809 248 ntBASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 AC139783.2-201ENST00000504847 1145 ntBASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.9□□□□□ -1.62
SHANK3Q9BYB0 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
SHANK3Q9BYB0 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.9□□□□□ -1.63
SHANK3Q9BYB0 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.9□□□□□ -1.63
SHANK3Q9BYB0 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
SHANK3Q9BYB0 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SHANK3Q9BYB0 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC4.9□□□□□ -1.63
SHANK3Q9BYB0 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SHANK3Q9BYB0 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 RNA5SP120-201ENST00000410900 112 ntBASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 RN7SL271P-201ENST00000487601 295 ntBASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 SNORA70.17-201ENST00000516449 133 ntBASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 AC007066.2-202ENST00000566531 914 ntBASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 SNORA62.6-201ENST00000606322 83 ntBASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 AL591424.2-201ENST00000617023 128 ntBASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 MFSD8-236ENST00000641509 4050 ntBASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 RPL21P110-201ENST00000433345 446 ntBASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 MAPRE1P3-201ENST00000435438 796 ntBASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 FTH1P24-201ENST00000503502 462 ntBASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 AC118465.1-201ENST00000513820 1271 ntBASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 RANP9-201ENST00000519957 271 ntBASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 MIR3945-201ENST00000581853 98 ntBASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 AC133552.5-201ENST00000604266 540 ntBASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
SHANK3Q9BYB0 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 RPL7AP73-201ENST00000413490 353 ntBASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 DPY19L1P2-201ENST00000426647 915 ntBASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 AC127537.2-201ENST00000439258 465 ntBASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 ARL4AP3-201ENST00000441452 574 ntBASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 RPL21P11-201ENST00000461458 483 ntBASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 APOOP2-201ENST00000461561 539 ntBASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 AC096576.1-201ENST00000489014 359 ntBASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 AC097462.2-201ENST00000504623 481 ntBASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 AC023389.2-201ENST00000580031 955 ntBASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 AC136601.2-201ENST00000604356 474 ntBASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 AC006386.2-201ENST00000624491 75 ntBASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 AC012005.1-201ENST00000624575 75 ntBASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 MTCO1P24-201ENST00000515438 1558 ntBASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SHANK3Q9BYB0 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 AC005008.1-201ENST00000456151 612 ntBASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms