Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CKS1BP5-201ENST00000434172 273 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AL138799.3-201ENST00000438968 350 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC006326.1-201ENST00000445465 787 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 MTND5P8-201ENST00000449817 1083 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 RPL23AP23-201ENST00000452590 471 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 CABYRP1-201ENST00000465493 1045 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 RPS26P3-201ENST00000470205 348 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 RN7SL738P-201ENST00000470264 297 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC090543.2-201ENST00000483963 348 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC004057.1-201ENST00000485827 348 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AP001086.1-201ENST00000494882 321 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC025164.1-201ENST00000496249 478 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC025445.1-201ENST00000502728 300 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 OR51K1P-201ENST00000510214 950 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC005921.1-201ENST00000510589 286 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC006499.6-201ENST00000511169 607 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 NDUFB4P9-201ENST00000511646 388 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 BTF3P13-201ENST00000513224 490 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC015795.1-201ENST00000513669 327 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 RNU6-751P-201ENST00000516382 101 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC008638.3-201ENST00000603341 463 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AL391358.1-201ENST00000605342 190 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC100814.1-201ENST00000606963 623 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC023043.4-201ENST00000612081 449 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC091905.2-201ENST00000623143 306 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC083865.1-201ENST00000636634 831 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 EXOC5P1-201ENST00000510543 1969 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AC066616.2-201ENST00000559334 1481 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 RNA5SP151-201ENST00000365632 117 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 RN7SKP100-201ENST00000411258 284 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 FAR2P2-201ENST00000413041 594 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AC241520.1-201ENST00000422654 1099 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 HLA-N-201ENST00000437516 135 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AC090142.1-201ENST00000465776 462 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AC092905.1-201ENST00000467527 949 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AC126121.1-201ENST00000482313 553 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AC078918.1-201ENST00000498515 228 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 OR4R3P-201ENST00000525084 838 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 OR5AK3P-201ENST00000527486 1297 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 MTND2P26-201ENST00000528255 1029 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AC137768.1-201ENST00000549998 553 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AC234771.5-201ENST00000600161 514 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 BX322635.1-201ENST00000605804 496 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AC012531.5-201ENST00000611375 151 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 CR381572.2-201ENST00000624852 397 ntBASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.2□□□□□ -1.74
ZNF540Q8NDQ6 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms