Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC6.21□□□□□ -1.41
SOX4Q06945 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
SOX4Q06945 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
SOX4Q06945 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.42
SOX4Q06945 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
SOX4Q06945 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC6.21□□□□□ -1.42
SOX4Q06945 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC6.21□□□□□ -1.42
SOX4Q06945 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC6.21□□□□□ -1.42
SOX4Q06945 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.42
SOX4Q06945 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SOX4Q06945 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SOX4Q06945 RNU6-845P-201ENST00000362578 103 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SOX4Q06945 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SOX4Q06945 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
SOX4Q06945 RNU6-532P-201ENST00000384318 107 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 AC005522.1-201ENST00000395416 346 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 AL049693.1-201ENST00000402760 611 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 ZSCAN12P1-201ENST00000406489 419 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 MIR1303-201ENST00000408625 86 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC6.21□□□□□ -1.42
SOX4Q06945 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC6.21□□□□□ -1.42
SOX4Q06945 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC6.21□□□□□ -1.42
SOX4Q06945 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC6.21□□□□□ -1.42
SOX4Q06945 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC6.21□□□□□ -1.42
SOX4Q06945 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.21□□□□□ -1.42
SOX4Q06945 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC6.21□□□□□ -1.42
SOX4Q06945 AC096576.1-201ENST00000489014 359 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 AC007182.2-201ENST00000489251 402 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 RPL35P6-201ENST00000490024 372 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 NIFKP7-201ENST00000503365 834 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 HSPA8P13-201ENST00000523715 472 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
SOX4Q06945 DEFB131D-201ENST00000526803 184 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 AP003122.4-201ENST00000530980 758 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC6.21□□□□□ -1.42
SOX4Q06945 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SOX4Q06945 POLR2KP1-201ENST00000553226 168 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC6.21□□□□□ -1.42
SOX4Q06945 RPL21P5-201ENST00000554662 472 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC6.21□□□□□ -1.42
SOX4Q06945 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC6.21□□□□□ -1.42
SOX4Q06945 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC6.21□□□□□ -1.42
SOX4Q06945 MIR4505-201ENST00000582238 73 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 MIR548Y-201ENST00000582739 110 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 MIR4260-201ENST00000583107 67 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC6.21□□□□□ -1.42
SOX4Q06945 XIST-210ENST00000602863 775 ntTSL 3 BASIC6.21□□□□□ -1.42
SOX4Q06945 AC109309.2-201ENST00000612597 332 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 AL512624.1-201ENST00000613638 469 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 AC234782.5-201ENST00000617723 324 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 AC005899.7-201ENST00000618199 588 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC6.21□□□□□ -1.42
SOX4Q06945 AL049767.1-202ENST00000637826 242 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
SOX4Q06945 MTCO1P14-201ENST00000441695 1559 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC6.21□□□□□ -1.42
SOX4Q06945 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
SOX4Q06945 CPS1-IT1-201ENST00000628368 2306 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC6.21□□□□□ -1.42
SOX4Q06945 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC6.21□□□□□ -1.42
SOX4Q06945 MAPK6PS2-201ENST00000379571 2060 ntBASIC6.21□□□□□ -1.42
SOX4Q06945 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC6.21□□□□□ -1.42
SOX4Q06945 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SOX4Q06945 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
SOX4Q06945 AP004607.3-201ENST00000530354 3915 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC6.2□□□□□ -1.42
SOX4Q06945 MFSD8-239ENST00000641590 2479 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
SOX4Q06945 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC6.2□□□□□ -1.42
SOX4Q06945 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SOX4Q06945 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC6.2□□□□□ -1.42
SOX4Q06945 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC6.2□□□□□ -1.42
SOX4Q06945 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
SOX4Q06945 OR4A15-201ENST00000314706 1035 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 RNU6-582P-201ENST00000362989 107 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
SOX4Q06945 Y_RNA.419-201ENST00000384041 102 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 RNU6-1122P-201ENST00000384449 107 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 PEX12P1-201ENST00000400284 1048 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 DNAJA1P4-201ENST00000406473 1166 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 RNA5SP498-201ENST00000411342 120 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AC017078.1-201ENST00000416146 368 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 MTCO3P12-201ENST00000416718 547 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 BOLA3P4-201ENST00000418151 400 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 NME1P1-201ENST00000420914 382 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 PIGFP2-201ENST00000421400 651 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC6.2□□□□□ -1.42
SOX4Q06945 AC073335.1-201ENST00000427776 363 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC6.2□□□□□ -1.42
SOX4Q06945 TAAR7P-201ENST00000436141 242 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 MRPS21P3-201ENST00000436696 262 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC6.2□□□□□ -1.42
SOX4Q06945 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC6.2□□□□□ -1.42
SOX4Q06945 AC079448.1-201ENST00000449377 373 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 RPL26P28-201ENST00000451325 435 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AC007537.2-201ENST00000472093 511 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AC006539.1-201ENST00000481419 501 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 FAM172BP-201ENST00000487497 1089 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 FTH1P8-201ENST00000498161 514 ntBASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms