Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNU6-276P-201ENST00000516114 96 ntBASIC4.46□□□□□ -1.7
MSH3P20585 RNU6-1004P-201ENST00000516584 111 ntBASIC4.46□□□□□ -1.7
MSH3P20585 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC4.46□□□□□ -1.7
MSH3P20585 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.46□□□□□ -1.7
MSH3P20585 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC4.46□□□□□ -1.7
MSH3P20585 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.46□□□□□ -1.7
MSH3P20585 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC4.46□□□□□ -1.7
MSH3P20585 AC084783.1-201ENST00000565846 910 ntBASIC4.46□□□□□ -1.7
MSH3P20585 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.46□□□□□ -1.7
MSH3P20585 MIR4700-201ENST00000578311 74 ntBASIC4.46□□□□□ -1.7
MSH3P20585 MTCO2P2-201ENST00000591258 225 ntBASIC4.46□□□□□ -1.7
MSH3P20585 BPIFA4P-203ENST00000603168 689 ntBASIC4.46□□□□□ -1.7
MSH3P20585 AC008782.1-201ENST00000603386 430 ntBASIC4.46□□□□□ -1.7
MSH3P20585 AC103792.1-201ENST00000603591 919 ntBASIC4.46□□□□□ -1.7
MSH3P20585 AL049844.2-201ENST00000604280 628 ntBASIC4.46□□□□□ -1.7
MSH3P20585 AC112220.2-201ENST00000605513 533 ntBASIC4.46□□□□□ -1.7
MSH3P20585 OR2BH1P-201ENST00000608850 864 ntBASIC4.46□□□□□ -1.7
MSH3P20585 AC019193.2-201ENST00000610012 634 ntBASIC4.46□□□□□ -1.7
MSH3P20585 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.46□□□□□ -1.7
MSH3P20585 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.46□□□□□ -1.7
MSH3P20585 AC006065.6-201ENST00000625201 545 ntBASIC4.46□□□□□ -1.7
MSH3P20585 AC119674.1-212ENST00000641155 993 ntBASIC4.46□□□□□ -1.7
MSH3P20585 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSH3P20585 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSH3P20585 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.46□□□□□ -1.7
MSH3P20585 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
MSH3P20585 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSH3P20585 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
MSH3P20585 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
MSH3P20585 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
MSH3P20585 NXPH1-205ENST00000602349 1953 ntBASIC4.45□□□□□ -1.7
MSH3P20585 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.45□□□□□ -1.7
MSH3P20585 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
MSH3P20585 AC105074.1-201ENST00000623380 3095 ntBASIC4.45□□□□□ -1.7
MSH3P20585 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
MSH3P20585 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
MSH3P20585 Z98755.1-201ENST00000407015 1384 ntBASIC4.45□□□□□ -1.7
MSH3P20585 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
MSH3P20585 RNA5SP28-201ENST00000363841 119 ntBASIC4.45□□□□□ -1.7
MSH3P20585 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
MSH3P20585 RNU6-532P-201ENST00000384318 107 ntBASIC4.45□□□□□ -1.7
MSH3P20585 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
MSH3P20585 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.45□□□□□ -1.7
MSH3P20585 RPS27AP11-201ENST00000402798 447 ntBASIC4.45□□□□□ -1.7
MSH3P20585 ZNF602P-201ENST00000405929 924 ntBASIC4.45□□□□□ -1.7
MSH3P20585 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
MSH3P20585 AC009302.1-201ENST00000417147 390 ntBASIC4.45□□□□□ -1.7
MSH3P20585 MTCO3P4-201ENST00000419236 787 ntBASIC4.45□□□□□ -1.7
MSH3P20585 RPL7AP25-201ENST00000423357 805 ntBASIC4.45□□□□□ -1.7
MSH3P20585 AP001324.1-201ENST00000428553 399 ntBASIC4.45□□□□□ -1.7
MSH3P20585 FO393419.3-201ENST00000428741 282 ntBASIC4.45□□□□□ -1.7
MSH3P20585 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.45□□□□□ -1.7
MSH3P20585 RPL23AP1-201ENST00000428990 471 ntBASIC4.45□□□□□ -1.7
MSH3P20585 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.45□□□□□ -1.7
MSH3P20585 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.45□□□□□ -1.7
MSH3P20585 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC4.45□□□□□ -1.7
MSH3P20585 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC4.45□□□□□ -1.7
MSH3P20585 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.45□□□□□ -1.7
MSH3P20585 AC000041.1-201ENST00000439655 175 ntBASIC4.45□□□□□ -1.7
MSH3P20585 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.45□□□□□ -1.7
MSH3P20585 RPL23AP43-201ENST00000446445 471 ntBASIC4.45□□□□□ -1.7
MSH3P20585 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.45□□□□□ -1.7
MSH3P20585 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.45□□□□□ -1.7
MSH3P20585 AC008280.2-201ENST00000455473 307 ntBASIC4.45□□□□□ -1.7
MSH3P20585 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.45□□□□□ -1.7
MSH3P20585 RPL7AP52-201ENST00000458096 790 ntBASIC4.45□□□□□ -1.7
MSH3P20585 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
MSH3P20585 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
MSH3P20585 HPRT1P1-201ENST00000509498 657 ntBASIC4.45□□□□□ -1.7
MSH3P20585 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
MSH3P20585 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.45□□□□□ -1.7
MSH3P20585 AC091163.3-201ENST00000518269 1144 ntBASIC4.45□□□□□ -1.7
MSH3P20585 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC4.45□□□□□ -1.7
MSH3P20585 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.45□□□□□ -1.7
MSH3P20585 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.45□□□□□ -1.7
MSH3P20585 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.45□□□□□ -1.7
MSH3P20585 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.45□□□□□ -1.7
MSH3P20585 RPL12P25-202ENST00000598100 674 ntBASIC4.45□□□□□ -1.7
MSH3P20585 RPL26P30-202ENST00000602923 645 ntBASIC4.45□□□□□ -1.7
MSH3P20585 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.45□□□□□ -1.7
MSH3P20585 AC022079.2-201ENST00000619739 566 ntBASIC4.45□□□□□ -1.7
MSH3P20585 AC024023.1-201ENST00000624530 922 ntBASIC4.45□□□□□ -1.7
MSH3P20585 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC4.45□□□□□ -1.7
MSH3P20585 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
MSH3P20585 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
MSH3P20585 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.45□□□□□ -1.7
MSH3P20585 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
MSH3P20585 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.45□□□□□ -1.7
MSH3P20585 RAD17P1-201ENST00000418130 2042 ntBASIC4.45□□□□□ -1.7
MSH3P20585 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.44□□□□□ -1.7
MSH3P20585 MFSD8-216ENST00000641147 4009 ntBASIC4.44□□□□□ -1.7
MSH3P20585 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.44□□□□□ -1.7
MSH3P20585 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
MSH3P20585 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.44□□□□□ -1.7
MSH3P20585 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.44□□□□□ -1.7
MSH3P20585 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
MSH3P20585 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.44□□□□□ -1.7
MSH3P20585 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
MSH3P20585 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
MSH3P20585 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms