Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC112198.2-201ENST00000426589 6996 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 OR10J6P-201ENST00000289731 930 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 RNU6-543P-201ENST00000362576 108 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 snoZ40.1-201ENST00000364540 72 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 RNU4-4P-201ENST00000364588 130 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 OR1L6-202ENST00000373684 1044 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 Y_RNA.465-201ENST00000384293 102 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 ATP5F1P3-201ENST00000397213 657 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 RPS27AP11-201ENST00000402798 447 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AL356967.1-201ENST00000406305 431 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC013404.1-201ENST00000413068 249 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 TIMM9P2-201ENST00000419324 266 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC099336.2-201ENST00000422457 254 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC011233.1-201ENST00000422812 283 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC012519.1-201ENST00000424588 610 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 IPMKP1-201ENST00000425988 855 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 CNOT7P1-201ENST00000429006 852 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC009238.2-201ENST00000431026 355 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC098826.1-201ENST00000433943 471 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AL353597.2-202ENST00000434901 373 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AL353093.1-201ENST00000441292 436 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 BX842559.2-201ENST00000451418 605 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC097262.1-201ENST00000452559 548 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC099560.2-201ENST00000457554 255 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 PSMC1P13-201ENST00000458195 985 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 RNU7-125P-201ENST00000458760 62 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AL672167.3-201ENST00000465951 960 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC096741.1-201ENST00000472250 846 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC011979.1-201ENST00000472300 483 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC006463.2-201ENST00000473326 348 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 RN7SL97P-201ENST00000486780 299 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC097173.1-201ENST00000505862 819 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 MTCYBP16-201ENST00000509187 1129 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 MTCYBP37-201ENST00000510642 1133 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 OR5H4P-201ENST00000510851 923 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 RN7SKP260-201ENST00000516907 149 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 RNU6-232P-201ENST00000517144 64 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 NAT2-202ENST00000520116 716 ntTSL 3 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 DUXAP1-201ENST00000556632 463 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 MTCO1P40-201ENST00000574371 625 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 RN7SL290P-201ENST00000578661 300 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC090616.2-202ENST00000584248 222 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC125494.3-201ENST00000602759 455 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 DUXAP11-201ENST00000603858 526 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AL392112.1-201ENST00000605115 829 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 OR2AS2P-201ENST00000606902 342 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 STMN1P1-201ENST00000617809 440 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AL157770.1-201ENST00000623049 439 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AP003497.2-201ENST00000624220 967 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC098679.5-201ENST00000624394 571 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 SGO1P1-201ENST00000603525 1447 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 SGO1P2-201ENST00000429458 1589 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC009313.2-201ENST00000417893 1941 ntBASIC5.19□□□□□ -1.58
DKK3Q9UBP4 AC005332.5-201ENST00000591222 2919 ntBASIC5.18□□□□□ -1.58
DKK3Q9UBP4 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC5.18□□□□□ -1.58
DKK3Q9UBP4 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
DKK3Q9UBP4 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
DKK3Q9UBP4 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
DKK3Q9UBP4 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.18□□□□□ -1.58
DKK3Q9UBP4 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
DKK3Q9UBP4 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
DKK3Q9UBP4 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms