Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RPL34P20-201ENST00000442771 351 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AC069540.1-201ENST00000446320 988 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 HMGN2P21-201ENST00000447764 270 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 OR52J1P-201ENST00000450596 932 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 RPS20P32-201ENST00000456044 356 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AC069240.1-201ENST00000548774 375 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 SERPINE4P-201ENST00000554978 281 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 MIR4330-201ENST00000579077 105 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AC091042.1-201ENST00000579213 173 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AC007687.1-201ENST00000602704 304 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AC025946.2-201ENST00000603398 234 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AL031320.1-201ENST00000604177 357 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AC018754.1-201ENST00000607486 925 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AL627230.1-201ENST00000613077 211 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AC090617.9-201ENST00000623751 147 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AC011266.1-201ENST00000624119 3569 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AC099654.2-201ENST00000433031 1980 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 MIR298-201ENST00000401212 88 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 RNU2-21P-201ENST00000410368 188 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 RNA5SP104-201ENST00000410989 118 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 RN7SKP167-201ENST00000411047 285 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 PTP4A1P5-201ENST00000420305 455 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 MTND4P24-201ENST00000424002 397 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 OR5AW1P-201ENST00000426334 1006 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 RPL23AP33-201ENST00000442301 452 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 OR1H1P-201ENST00000448731 937 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 BX276092.4-201ENST00000452056 248 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AC104164.2-201ENST00000496953 495 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 RNU2-58P-201ENST00000516403 183 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 RNA5SP73-201ENST00000516744 108 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 UBE2FP2-201ENST00000566646 462 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AL512782.1-201ENST00000603093 364 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 RMST_9.1-201ENST00000619945 193 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AC087385.3-201ENST00000620477 187 ntBASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
ZNF540Q8NDQ6 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
ZNF540Q8NDQ6 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 RNA5SP189-201ENST00000364920 115 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 RHOT1P2-201ENST00000366423 333 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 RNU1-44P-201ENST00000384453 163 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 MIR93-201ENST00000385024 80 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 RPS16P5-201ENST00000406501 404 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 MIR1183-201ENST00000408856 89 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC004552.1-201ENST00000419089 348 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 NIPA2P1-201ENST00000426223 976 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AC073335.1-201ENST00000427776 363 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 EIF2S2P3-201ENST00000428356 999 ntBASIC4.21□□□□□ -1.74
ZNF540Q8NDQ6 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms