Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 OR10J6P-201ENST00000289731 930 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC079741.1-201ENST00000321498 212 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 UBE2Q2P1-202ENST00000354771 883 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 RNU6-353P-201ENST00000364266 108 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 RNA5SP90-201ENST00000364801 99 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AL359837.1-201ENST00000381357 287 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AL035079.1-201ENST00000405210 287 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AP002530.1-201ENST00000405705 684 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 ZNF602P-201ENST00000405929 924 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 VN1R51P-201ENST00000411675 945 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 SAGE2P-201ENST00000420011 2126 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC234064.1-201ENST00000436312 247 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AL031584.1-201ENST00000447169 754 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC244505.3-201ENST00000454598 187 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 XACT-201ENST00000468762 497 ntTSL 5 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC008837.1-201ENST00000511513 412 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 ENPP7P9-201ENST00000514456 627 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 PRELID3BP4-201ENST00000515476 571 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 RNA5SP373-201ENST00000517271 95 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 IGKV2-36-201ENST00000519999 223 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 HMGB1P40-201ENST00000525121 540 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 MORF4L1P3-201ENST00000525966 950 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 NDUFS5P6-201ENST00000529136 295 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC116553.2-201ENST00000564203 463 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 MTND1P8-201ENST00000571424 950 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AL160237.3-201ENST00000604114 1013 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC009948.4-201ENST00000604692 675 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC112220.2-201ENST00000605513 533 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 VN1R74P-201ENST00000613259 503 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 MIR7703-201ENST00000620784 77 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC007529.1-201ENST00000418574 2178 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC104446.1-201ENST00000613728 1321 ntBASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
PDLIM3Q53GG5 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 OR55B1P-203ENST00000641518 2602 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 U3.3-201ENST00000362986 216 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 RNU6-1339P-201ENST00000363574 91 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 SNORA57.1-201ENST00000391227 145 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 AL590290.1-201ENST00000405336 380 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 OR4K12P-201ENST00000406538 961 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 RN7SKP126-201ENST00000411143 300 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 TRIM60P5Y-201ENST00000413946 574 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 TMBIM7P-201ENST00000418074 855 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 AL389915.1-201ENST00000422463 466 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 RPL7P57-201ENST00000423238 740 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 UBE2V1P5-201ENST00000440070 405 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 ANKRD30BP3-201ENST00000444850 1070 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 AL929288.2-201ENST00000446368 407 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 AC004980.3-201ENST00000447046 365 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 NUTF2P7-201ENST00000453086 375 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 AL591473.1-201ENST00000464297 313 ntBASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC4.13□□□□□ -1.75
PDLIM3Q53GG5 AL035404.1-201ENST00000497982 568 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms